Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G48970 - ( mitochondrial substrate carrier family protein )

18 Proteins interacs with AT5G48970
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G01100

Predicted

Phylogenetic profile method

FSW = 0.1016

Class C:

mitochondrion

ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1) ADP TRANSMEMBRANE TRANSPORTER/ AMP TRANSMEMBRANE TRANSPORTER/ ATP TRANSMEMBRANE TRANSPORTER/ BINDING
AT4G26180

Predicted

Phylogenetic profile method

FSW = 0.2193

Class C:

mitochondrion

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT3G30775

Predicted

two hybrid

Co-expression

FSW = 0.0504

Class C:

mitochondrion

ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5) PROLINE DEHYDROGENASE
AT5G38710

Predicted

two hybrid

FSW = 0.0448

Class C:

mitochondrion

PROLINE OXIDASE PUTATIVE / OSMOTIC STRESS-RESPONSIVE PROLINE DEHYDROGENASE PUTATIVE
AT3G21390

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2048

Class C:

mitochondrion

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT2G37890

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2083

Class C:

mitochondrion

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT2G36620

Predicted

two hybrid

two hybrid

FSW = 0.0346

Unknown

RPL24A (RIBOSOMAL PROTEIN L24) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G38740

Predicted

two hybrid

FSW = 0.0298

Unknown

ROC1 (ROTAMASE CYP 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT5G02490

Predicted

two hybrid

FSW = 0.0079

Unknown

HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2)
AT2G21130

Predicted

two hybrid

FSW = 0.1023

Unknown

PEPTIDYL-PROLYL CIS-TRANS ISOMERASE / CYCLOPHILIN (CYP2) / ROTAMASE
AT1G21690

Predicted

Gene fusion method

FSW = 0.0246

Unknown

EMB1968 (EMBRYO DEFECTIVE 1968) ATP BINDING / ATPASE/ DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G17790

Predicted

two hybrid

FSW = 0.0847

Unknown

VAR3 (VARIEGATED 3) BINDING / ZINC ION BINDING
AT1G67400

Predicted

two hybrid

two hybrid

FSW = 0.1524

Unknown

INVOLVED IN PHAGOCYTOSIS LOCATED IN CYTOSKELETON CONTAINS INTERPRO DOMAIN/S ENGULFMENT AND CELL MOTILITY ELMO (INTERPROIPR006816) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PHAGOCYTOSIS AND CELL MOTILITY PROTEIN ELMO1-RELATED (TAIRAT3G434001) HAS 660 BLAST HITS TO 660 PROTEINS IN 104 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 430 FUNGI - 39 PLANTS - 109 VIRUSES - 0 OTHER EUKARYOTES - 82 (SOURCE NCBI BLINK)
AT3G60260

Predicted

two hybrid

FSW = 0.0952

Unknown

PHAGOCYTOSIS AND CELL MOTILITY PROTEIN ELMO1-RELATED
AT4G20980

Predicted

two hybrid

two hybrid

FSW = 0.0818

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 PUTATIVE / EIF-3 ZETA PUTATIVE / EIF3D PUTATIVE
AT5G09750

Predicted

two hybrid

FSW = 0.1524

Unknown

HEC3 (HECATE 3) DNA BINDING / TRANSCRIPTION FACTOR
AT5G11640

Predicted

two hybrid

two hybrid

FSW = 0.1524

Unknown

EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S THIOREDOXIN FOLD (INTERPROIPR012335) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) HAS 154 BLAST HITS TO 154 PROTEINS IN 61 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 125 FUNGI - 0 PLANTS - 20 VIRUSES - 0 OTHER EUKARYOTES - 9 (SOURCE NCBI BLINK)
AT5G44320

Predicted

two hybrid

FSW = 0.0861

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 PUTATIVE / EIF-3 ZETA PUTATIVE / EIF3D PUTATIVE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454