Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT5G49010 - ( SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5) )
35 Proteins interacs with AT5G49010Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G49240 | PredictedSynthetic Lethality | FSW = 0.0203
| Unknown | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G80190 | Predictedtwo hybridtwo hybridtwo hybridtwo hybridinterologs mappingAffinity Capture-Westerntwo hybridAffinity Capture-MSinteraction prediction | FSW = 0.0581
| Unknown | PSF1 (PARTNER OF SLD FIVE 1) |
AT5G16130 | Predictedtwo hybrid | FSW = 0.0513
| Unknown | 40S RIBOSOMAL PROTEIN S7 (RPS7C) |
AT3G12110 | PredictedSynthetic Lethality | FSW = 0.0181
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G55360 | Predictedtwo hybridtwo hybrid | FSW = 0.0083
| Unknown | CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH) |
AT1G44900 | PredictedAffinity Capture-MS | FSW = 0.1807
| Unknown | ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE |
AT4G10710 | PredictedAffinity Capture-MS | FSW = 0.0440
| Unknown | SPT16 (GLOBAL TRANSCRIPTION FACTOR C) |
AT4G02060 | PredictedAffinity Capture-MS | FSW = 0.1890
| Unknown | PRL (PROLIFERA) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT4G22380 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0421
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT5G20160 | Predictedtwo hybrid | FSW = 0.0385
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT3G27380 | Predictedtwo hybrid | FSW = 0.0710
| Unknown | SDH2-1 ELECTRON CARRIER/ SUCCINATE DEHYDROGENASE |
AT5G65165 | Predictedtwo hybrid | FSW = 0.0539
| Unknown | SDH2-3 ELECTRON CARRIER/ SUCCINATE DEHYDROGENASE |
AT1G72090 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0229
| Unknown | RADICAL SAM DOMAIN-CONTAINING PROTEIN / TRAM DOMAIN-CONTAINING PROTEIN |
AT3G02560 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0288
| Unknown | 40S RIBOSOMAL PROTEIN S7 (RPS7B) |
AT2G43460 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0243
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38A) |
AT3G28730 | PredictedAffinity Capture-MS | FSW = 0.0268
| Unknown | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR |
AT3G12530 | Predictedtwo hybridtwo hybridinterologs mappingAffinity Capture-MSAffinity Capture-MStwo hybridtwo hybridAffinity Capture-MSAffinity Capture-WesternCo-expression | FSW = 0.0422
| Unknown | PSF2 |
AT1G32750 | Predictedtwo hybridtwo hybrid | FSW = 0.0075
| Unknown | HAF01 DNA BINDING / HISTONE ACETYLTRANSFERASE |
AT1G34370 | Predictedtwo hybrid | FSW = 0.0132
| Unknown | STOP1 (SENSITIVE TO PROTON RHIZOTOXICITY 1) NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT3G19040 | Predictedtwo hybrid | FSW = 0.0201
| Unknown | HAF2 (HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 2) DNA BINDING / HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR |
AT3G59540 | Predictedtwo hybrid | FSW = 0.0064
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT5G06150 | Predictedtwo hybridtwo hybrid | FSW = 0.0078
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G47350 | Predictedtwo hybridtwo hybrid | FSW = 0.0248
| Unknown | PAPA-1-LIKE FAMILY PROTEIN / ZINC FINGER (HIT TYPE) FAMILY PROTEIN |
AT2G07690 | PredictedAffinity Capture-MS | FSW = 0.1943
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT2G16440 | PredictedAffinity Capture-MS | FSW = 0.1946
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT2G20980 | PredictedAffinity Capture-MS | FSW = 0.2717
| Unknown | MCM10 |
AT3G02820 | PredictedAffinity Capture-MS | FSW = 0.0357
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT3G25100 | PredictedAffinity Capture-MS | FSW = 0.1877
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
AT3G42660 | PredictedAffinity Capture-MS | FSW = 0.0486
| Unknown | NUCLEOTIDE BINDING |
AT5G44635 | PredictedAffinity Capture-MS | FSW = 0.1161
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT5G46280 | PredictedAffinity Capture-MS | FSW = 0.1200
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT5G27740 | PredictedSynthetic LethalityCo-expression | FSW = 0.0519
| Unknown | EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G55310 | PredictedAffinity Capture-MS | FSW = 0.0616
| Unknown | TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I |
AT1G19080 | Predictedinterologs mapping | FSW = 0.1876
| Unknown | TTN10 (TITAN 10) |
AT3G60240 | Predictedtwo hybrid | FSW = 0.0147
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454