Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G49010 - ( SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5) )

35 Proteins interacs with AT5G49010
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G49240

Predicted

Synthetic Lethality

FSW = 0.0203

Unknown

ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G80190

Predicted

two hybrid

two hybrid

two hybrid

two hybrid

interologs mapping

Affinity Capture-Western

two hybrid

Affinity Capture-MS

interaction prediction

FSW = 0.0581

Unknown

PSF1 (PARTNER OF SLD FIVE 1)
AT5G16130

Predicted

two hybrid

FSW = 0.0513

Unknown

40S RIBOSOMAL PROTEIN S7 (RPS7C)
AT3G12110

Predicted

Synthetic Lethality

FSW = 0.0181

Unknown

ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G55360

Predicted

two hybrid

two hybrid

FSW = 0.0083

Unknown

CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH)
AT1G44900

Predicted

Affinity Capture-MS

FSW = 0.1807

Unknown

ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE
AT4G10710

Predicted

Affinity Capture-MS

FSW = 0.0440

Unknown

SPT16 (GLOBAL TRANSCRIPTION FACTOR C)
AT4G02060

Predicted

Affinity Capture-MS

FSW = 0.1890

Unknown

PRL (PROLIFERA) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT4G22380

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.0421

Unknown

RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT5G20160

Predicted

two hybrid

FSW = 0.0385

Unknown

RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT3G27380

Predicted

two hybrid

FSW = 0.0710

Unknown

SDH2-1 ELECTRON CARRIER/ SUCCINATE DEHYDROGENASE
AT5G65165

Predicted

two hybrid

FSW = 0.0539

Unknown

SDH2-3 ELECTRON CARRIER/ SUCCINATE DEHYDROGENASE
AT1G72090

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.0229

Unknown

RADICAL SAM DOMAIN-CONTAINING PROTEIN / TRAM DOMAIN-CONTAINING PROTEIN
AT3G02560

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.0288

Unknown

40S RIBOSOMAL PROTEIN S7 (RPS7B)
AT2G43460

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.0243

Unknown

60S RIBOSOMAL PROTEIN L38 (RPL38A)
AT3G28730

Predicted

Affinity Capture-MS

FSW = 0.0268

Unknown

ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT3G12530

Predicted

two hybrid

two hybrid

interologs mapping

Affinity Capture-MS

Affinity Capture-MS

two hybrid

two hybrid

Affinity Capture-MS

Affinity Capture-Western

Co-expression

FSW = 0.0422

Unknown

PSF2
AT1G32750

Predicted

two hybrid

two hybrid

FSW = 0.0075

Unknown

HAF01 DNA BINDING / HISTONE ACETYLTRANSFERASE
AT1G34370

Predicted

two hybrid

FSW = 0.0132

Unknown

STOP1 (SENSITIVE TO PROTON RHIZOTOXICITY 1) NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT3G19040

Predicted

two hybrid

FSW = 0.0201

Unknown

HAF2 (HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 2) DNA BINDING / HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR
AT3G59540Predicted

two hybrid

FSW = 0.0064

Unknown

60S RIBOSOMAL PROTEIN L38 (RPL38B)
AT5G06150

Predicted

two hybrid

two hybrid

FSW = 0.0078

Unknown

CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT2G47350

Predicted

two hybrid

two hybrid

FSW = 0.0248

Unknown

PAPA-1-LIKE FAMILY PROTEIN / ZINC FINGER (HIT TYPE) FAMILY PROTEIN
AT2G07690

Predicted

Affinity Capture-MS

FSW = 0.1943

Unknown

MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN
AT2G16440

Predicted

Affinity Capture-MS

FSW = 0.1946

Unknown

DNA REPLICATION LICENSING FACTOR PUTATIVE
AT2G20980

Predicted

Affinity Capture-MS

FSW = 0.2717

Unknown

MCM10
AT3G02820

Predicted

Affinity Capture-MS

FSW = 0.0357

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT3G25100

Predicted

Affinity Capture-MS

FSW = 0.1877

Unknown

CDC45 (CELL DIVISION CYCLE 45)
AT3G42660

Predicted

Affinity Capture-MS

FSW = 0.0486

Unknown

NUCLEOTIDE BINDING
AT5G44635

Predicted

Affinity Capture-MS

FSW = 0.1161

Unknown

MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN
AT5G46280

Predicted

Affinity Capture-MS

FSW = 0.1200

Unknown

DNA REPLICATION LICENSING FACTOR PUTATIVE
AT5G27740

Predicted

Synthetic Lethality

Co-expression

FSW = 0.0519

Unknown

EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G55310

Predicted

Affinity Capture-MS

FSW = 0.0616

Unknown

TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I
AT1G19080

Predicted

interologs mapping

FSW = 0.1876

Unknown

TTN10 (TITAN 10)
AT3G60240

Predicted

two hybrid

FSW = 0.0147

Unknown

EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454