Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G49060 - ( DNAJ heat shock N-terminal domain-containing protein )
22 Proteins interacs with AT5G49060Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78300 | Experimental | FSW = 0.0044
| Class D:cytosol (p = 0.67) | GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G20260 | PredictedPhenotypic Suppression | FSW = 0.0428
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0111
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G22110 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0522
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G09660 | PredictedPhenotypic Enhancement | FSW = 0.0544
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT4G33090 | PredictedPhenotypic Enhancement | FSW = 0.0414
| Unknown | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
AT1G07180 | Predictedtwo hybridAffinity Capture-Westernsynthetic growth defectSynthetic Lethality | FSW = 0.1180
| Unknown | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
AT5G59950 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-Western | FSW = 0.0638
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G19140 | PredictedAffinity Capture-MS | FSW = 0.0711
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN UBIQUINONE BIOSYNTHETIC PROCESS LOCATED IN MITOCHONDRION EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S COQ9 (INTERPROIPR013718) UBIQUINONE BIOSYNTHESIS PROTEIN COQ9 (INTERPROIPR012762) HAS 598 BLAST HITS TO 598 PROTEINS IN 175 SPECIES ARCHAE - 0 BACTERIA - 149 METAZOA - 114 FUNGI - 60 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 253 (SOURCE NCBI BLINK) |
AT5G02730 | PredictedPhenotypic Suppression | FSW = 0.0154
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT5G24090 | PredictedSynthetic Lethality | FSW = 0.0680
| Unknown | ACIDIC ENDOCHITINASE (CHIB1) |
AT1G10090 | PredictedPhenotypic SuppressionPhenotypic EnhancementSynthetic LethalitySynthetic LethalitySynthetic Lethalityinterologs mappingSynthetic LethalityAffinity Capture-MSSynthetic Lethalitytwo hybridinterologs mappingPhenotypic EnhancementPhenotypic Suppression | FSW = 0.0807
| Unknown | UNKNOWN PROTEIN |
AT1G27040 | PredictedPhenotypic Suppression | FSW = 0.0424
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT1G66240 | Predictedtwo hybrid | FSW = 0.1390
| Unknown | ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1) METAL ION BINDING |
AT2G34750 | PredictedPhenotypic Enhancement | FSW = 0.0613
| Unknown | RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN |
AT3G09640 | PredictedPhenotypic Suppression | FSW = 0.0629
| Unknown | APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE |
AT3G19940 | PredictedAffinity Capture-MS | FSW = 0.0111
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G22290 | PredictedPhenotypic Suppression | FSW = 0.0773
| Unknown | UNKNOWN PROTEIN |
AT5G04800 | PredictedPhenotypic Enhancement | FSW = 0.0415
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17D) |
AT5G17000 | PredictedAffinity Capture-MS | FSW = 0.0060
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G08160 | PredictedSynthetic Lethality | FSW = 0.0229
| Unknown | ATPK3 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G65980 | PredictedPhenotypic Enhancement | FSW = 0.1190
| Unknown | AUXIN EFFLUX CARRIER FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454