Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G49060 - ( DNAJ heat shock N-terminal domain-containing protein )

22 Proteins interacs with AT5G49060
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G78300

Experimental

FSW = 0.0044

Class D:

cytosol (p = 0.67)

GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G20260

Predicted

Phenotypic Suppression

FSW = 0.0428

Unknown

HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0111

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT3G22110

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.0522

Unknown

PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G09660

Predicted

Phenotypic Enhancement

FSW = 0.0544

Unknown

PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE
AT4G33090

Predicted

Phenotypic Enhancement

FSW = 0.0414

Unknown

APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE
AT1G07180

Predicted

two hybrid

Affinity Capture-Western

synthetic growth defect

Synthetic Lethality

FSW = 0.1180

Unknown

NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE
AT5G59950

Predicted

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Affinity Capture-Western

FSW = 0.0638

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT1G19140

Predicted

Affinity Capture-MS

FSW = 0.0711

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN UBIQUINONE BIOSYNTHETIC PROCESS LOCATED IN MITOCHONDRION EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S COQ9 (INTERPROIPR013718) UBIQUINONE BIOSYNTHESIS PROTEIN COQ9 (INTERPROIPR012762) HAS 598 BLAST HITS TO 598 PROTEINS IN 175 SPECIES ARCHAE - 0 BACTERIA - 149 METAZOA - 114 FUNGI - 60 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 253 (SOURCE NCBI BLINK)
AT5G02730

Predicted

Phenotypic Suppression

FSW = 0.0154

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT5G24090

Predicted

Synthetic Lethality

FSW = 0.0680

Unknown

ACIDIC ENDOCHITINASE (CHIB1)
AT1G10090

Predicted

Phenotypic Suppression

Phenotypic Enhancement

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

interologs mapping

Synthetic Lethality

Affinity Capture-MS

Synthetic Lethality

two hybrid

interologs mapping

Phenotypic Enhancement

Phenotypic Suppression

FSW = 0.0807

Unknown

UNKNOWN PROTEIN
AT1G27040

Predicted

Phenotypic Suppression

FSW = 0.0424

Unknown

NITRATE TRANSPORTER PUTATIVE
AT1G66240

Predicted

two hybrid

FSW = 0.1390

Unknown

ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1) METAL ION BINDING
AT2G34750

Predicted

Phenotypic Enhancement

FSW = 0.0613

Unknown

RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN
AT3G09640

Predicted

Phenotypic Suppression

FSW = 0.0629

Unknown

APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE
AT3G19940

Predicted

Affinity Capture-MS

FSW = 0.0111

Unknown

SUGAR TRANSPORTER PUTATIVE
AT3G22290

Predicted

Phenotypic Suppression

FSW = 0.0773

Unknown

UNKNOWN PROTEIN
AT5G04800

Predicted

Phenotypic Enhancement

FSW = 0.0415

Unknown

40S RIBOSOMAL PROTEIN S17 (RPS17D)
AT5G17000

Predicted

Affinity Capture-MS

FSW = 0.0060

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G08160

Predicted

Synthetic Lethality

FSW = 0.0229

Unknown

ATPK3 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G65980

Predicted

Phenotypic Enhancement

FSW = 0.1190

Unknown

AUXIN EFFLUX CARRIER FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454