Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G49310 - ( IMPA-5 (IMPORTIN ALPHA ISOFORM 5) binding / protein transporter )
44 Proteins interacs with AT5G49310Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G66030 | Predictedtwo hybrid | FSW = 0.0216
| Unknown | ATGRIP PROTEIN BINDING |
AT5G16150 | Predictedin vivoin vitrotwo hybrid | FSW = 0.0074
| Unknown | PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G01600 | Predictedtwo hybrid | FSW = 0.0213
| Unknown | ATFER1 FERRIC IRON BINDING / IRON ION BINDING |
AT5G53480 | Predictedin vitroin vitro | FSW = 0.0331
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT5G57015 | Predictedin vitro | FSW = 0.0280
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G59960 | Predictedtwo hybrid | FSW = 0.0147
| Unknown | UNKNOWN PROTEIN |
AT4G09800 | Predictedtwo hybrid | FSW = 0.0062
| Unknown | RPS18C (S18 RIBOSOMAL PROTEIN) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G19385 | PredictedAffinity Capture-MS | FSW = 0.0117
| Unknown | ZINC ION BINDING |
AT3G06720 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0441
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT4G16143 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.2227
| Unknown | IMPA-2 (IMPORTIN ALPHA ISOFORM 2) BINDING / PROTEIN TRANSPORTER |
AT5G02570 | Predictedin vitro | FSW = 0.0284
| Unknown | HISTONE H2B PUTATIVE |
AT2G14170 | Predictedtwo hybrid | FSW = 0.0871
| Unknown | ALDH6B2 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE (ACYLATING)/ OXIDOREDUCTASE |
AT1G48160 | Predictedin vitroAffinity Capture-MS | FSW = 0.0259
| Unknown | SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN PUTATIVE / SRP19 PUTATIVE |
AT5G03730 | Predictedin vivoin vitro | FSW = 0.0086
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT2G46520 | Predictedtwo hybridin vitro | FSW = 0.1086
| Unknown | CELLULAR APOPTOSIS SUSCEPTIBILITY PROTEIN PUTATIVE / IMPORTIN-ALPHA RE-EXPORTER PUTATIVE |
AT4G02150 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.3743
| Unknown | MOS6 (MODIFIER OF SNC1 6) BINDING / PROTEIN TRANSPORTER |
AT1G72340 | Predictedtwo hybrid | FSW = 0.0323
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
AT4G11790 | Predictedtwo hybridtwo hybridin vitro | FSW = 0.0750
| Unknown | RAN-BINDING PROTEIN 1 DOMAIN-CONTAINING PROTEIN / RANBP1 DOMAIN-CONTAINING PROTEIN |
AT4G29580 | Predictedtwo hybrid | FSW = 0.0204
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT2G39740 | Predictedtwo hybrid | FSW = 0.0213
| Unknown | UNKNOWN PROTEIN |
AT5G38650 | Predictedtwo hybrid | FSW = 0.0681
| Unknown | PROTEASOME MATURATION FACTOR UMP1 FAMILY PROTEIN |
AT2G38280 | Predictedtwo hybrid | FSW = 0.0870
| Unknown | FAC1 (EMBRYONIC FACTOR1) AMP DEAMINASE |
AT3G05760 | Predictedtwo hybrid | FSW = 0.0089
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G07790 | Predictedtwo hybrid | FSW = 0.0242
| Unknown | DGCR14-RELATED |
AT3G52980 | Predictedtwo hybrid | FSW = 0.0851
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G54170 | Predictedtwo hybrid | FSW = 0.0213
| Unknown | ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37) PROTEIN BINDING |
AT4G18465 | Predictedtwo hybrid | FSW = 0.0136
| Unknown | RNA HELICASE PUTATIVE |
AT4G21540 | Predictedtwo hybrid | FSW = 0.0162
| Unknown | SPHK1 (SPHINGOSINE KINASE 1) D-ERYTHRO-SPHINGOSINE KINASE/ DIACYLGLYCEROL KINASE/ SPHINGANINE KINASE |
AT4G34370 | Predictedtwo hybrid | FSW = 0.0188
| Unknown | ARI1 (ARIADNE) PROTEIN BINDING / ZINC ION BINDING |
AT5G06600 | Predictedtwo hybrid | FSW = 0.0049
| Unknown | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT5G09740 | Predictedtwo hybrid | FSW = 0.0079
| Unknown | HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G23420 | Predictedtwo hybrid | FSW = 0.0300
| Unknown | HMGB6 TRANSCRIPTION FACTOR |
AT5G24510 | Predictedtwo hybrid | FSW = 0.0081
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 PUTATIVE |
AT5G41770 | Predictedtwo hybrid | FSW = 0.0238
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT5G55130 | Predictedtwo hybrid | FSW = 0.0090
| Unknown | CNX5 (CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 5) MO-MOLYBDOPTERIN COFACTOR SULFURASE |
AT5G60570 | Predictedtwo hybrid | FSW = 0.0189
| Unknown | KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN |
AT3G23090 | Predictedin vitroAffinity Capture-MS | FSW = 0.0750
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN INFLORESCENCE MERISTEM LEAF APEX HYPOCOTYL FLOWER ROOT EXPRESSED DURING PETAL DIFFERENTIATION AND EXPANSION STAGE CONTAINS INTERPRO DOMAIN/S TARGETING FOR XKLP2 (INTERPROIPR009675) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS WDL1 (TAIRAT3G046303) HAS 483 BLAST HITS TO 450 PROTEINS IN 87 SPECIES ARCHAE - 2 BACTERIA - 15 METAZOA - 188 FUNGI - 17 PLANTS - 148 VIRUSES - 0 OTHER EUKARYOTES - 113 (SOURCE NCBI BLINK) |
AT1G31360 | Predictedin vitrotwo hybrid | FSW = 0.0378
| Unknown | RECQL2 (ARABIDOPSIS RECQ HELICASE L2) 3-5 DNA HELICASE/ ATP-DEPENDENT HELICASE/ FOUR-WAY JUNCTION HELICASE/ PROTEIN BINDING |
AT3G22950 | Predictedin vitro | FSW = 0.0148
| Unknown | ATARFC1 (ADP-RIBOSYLATION FACTOR C1) GTP BINDING |
AT5G19000 | PredictedAffinity Capture-MS | FSW = 0.0396
| Unknown | ATBPM1 (BTB-POZ AND MATH DOMAIN 1) PROTEIN BINDING |
AT1G09270 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1329
| Unknown | IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER |
AT3G05720 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1730
| Unknown | IMPA-7 (IMPORTIN ALPHA ISOFORM 7) BINDING / PROTEIN TRANSPORTER |
AT5G52000 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.2353
| Unknown | IMPA-8 (IMPORTIN ALPHA ISOFORM 8) BINDING / PROTEIN TRANSPORTER |
AT1G02690 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0675
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454