Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G49310 - ( IMPA-5 (IMPORTIN ALPHA ISOFORM 5) binding / protein transporter )

44 Proteins interacs with AT5G49310
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G66030

Predicted

two hybrid

FSW = 0.0216

Unknown

ATGRIP PROTEIN BINDING
AT5G16150

Predicted

in vivo

in vitro

two hybrid

FSW = 0.0074

Unknown

PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT5G01600

Predicted

two hybrid

FSW = 0.0213

Unknown

ATFER1 FERRIC IRON BINDING / IRON ION BINDING
AT5G53480

Predicted

in vitro

in vitro

FSW = 0.0331

Unknown

IMPORTIN BETA-2 PUTATIVE
AT5G57015

Predicted

in vitro

FSW = 0.0280

Unknown

CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G59960

Predicted

two hybrid

FSW = 0.0147

Unknown

UNKNOWN PROTEIN
AT4G09800Predicted

two hybrid

FSW = 0.0062

Unknown

RPS18C (S18 RIBOSOMAL PROTEIN) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G19385

Predicted

Affinity Capture-MS

FSW = 0.0117

Unknown

ZINC ION BINDING
AT3G06720

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.0441

Unknown

IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER
AT4G16143

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.2227

Unknown

IMPA-2 (IMPORTIN ALPHA ISOFORM 2) BINDING / PROTEIN TRANSPORTER
AT5G02570

Predicted

in vitro

FSW = 0.0284

Unknown

HISTONE H2B PUTATIVE
AT2G14170

Predicted

two hybrid

FSW = 0.0871

Unknown

ALDH6B2 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE (ACYLATING)/ OXIDOREDUCTASE
AT1G48160

Predicted

in vitro

Affinity Capture-MS

FSW = 0.0259

Unknown

SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN PUTATIVE / SRP19 PUTATIVE
AT5G03730

Predicted

in vivo

in vitro

FSW = 0.0086

Unknown

CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE
AT2G46520

Predicted

two hybrid

in vitro

FSW = 0.1086

Unknown

CELLULAR APOPTOSIS SUSCEPTIBILITY PROTEIN PUTATIVE / IMPORTIN-ALPHA RE-EXPORTER PUTATIVE
AT4G02150

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.3743

Unknown

MOS6 (MODIFIER OF SNC1 6) BINDING / PROTEIN TRANSPORTER
AT1G72340

Predicted

two hybrid

FSW = 0.0323

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN
AT4G11790

Predicted

two hybrid

two hybrid

in vitro

FSW = 0.0750

Unknown

RAN-BINDING PROTEIN 1 DOMAIN-CONTAINING PROTEIN / RANBP1 DOMAIN-CONTAINING PROTEIN
AT4G29580

Predicted

two hybrid

FSW = 0.0204

Unknown

CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE
AT2G39740

Predicted

two hybrid

FSW = 0.0213

Unknown

UNKNOWN PROTEIN
AT5G38650

Predicted

two hybrid

FSW = 0.0681

Unknown

PROTEASOME MATURATION FACTOR UMP1 FAMILY PROTEIN
AT2G38280

Predicted

two hybrid

FSW = 0.0870

Unknown

FAC1 (EMBRYONIC FACTOR1) AMP DEAMINASE
AT3G05760

Predicted

two hybrid

FSW = 0.0089

Unknown

NUCLEIC ACID BINDING / ZINC ION BINDING
AT3G07790

Predicted

two hybrid

FSW = 0.0242

Unknown

DGCR14-RELATED
AT3G52980

Predicted

two hybrid

FSW = 0.0851

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G54170

Predicted

two hybrid

FSW = 0.0213

Unknown

ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37) PROTEIN BINDING
AT4G18465Predicted

two hybrid

FSW = 0.0136

Unknown

RNA HELICASE PUTATIVE
AT4G21540

Predicted

two hybrid

FSW = 0.0162

Unknown

SPHK1 (SPHINGOSINE KINASE 1) D-ERYTHRO-SPHINGOSINE KINASE/ DIACYLGLYCEROL KINASE/ SPHINGANINE KINASE
AT4G34370

Predicted

two hybrid

FSW = 0.0188

Unknown

ARI1 (ARIADNE) PROTEIN BINDING / ZINC ION BINDING
AT5G06600

Predicted

two hybrid

FSW = 0.0049

Unknown

UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT5G09740

Predicted

two hybrid

FSW = 0.0079

Unknown

HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G23420

Predicted

two hybrid

FSW = 0.0300

Unknown

HMGB6 TRANSCRIPTION FACTOR
AT5G24510

Predicted

two hybrid

FSW = 0.0081

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P1 PUTATIVE
AT5G41770

Predicted

two hybrid

FSW = 0.0238

Unknown

CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT5G55130

Predicted

two hybrid

FSW = 0.0090

Unknown

CNX5 (CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 5) MO-MOLYBDOPTERIN COFACTOR SULFURASE
AT5G60570

Predicted

two hybrid

FSW = 0.0189

Unknown

KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN
AT3G23090

Predicted

in vitro

Affinity Capture-MS

FSW = 0.0750

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN INFLORESCENCE MERISTEM LEAF APEX HYPOCOTYL FLOWER ROOT EXPRESSED DURING PETAL DIFFERENTIATION AND EXPANSION STAGE CONTAINS INTERPRO DOMAIN/S TARGETING FOR XKLP2 (INTERPROIPR009675) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS WDL1 (TAIRAT3G046303) HAS 483 BLAST HITS TO 450 PROTEINS IN 87 SPECIES ARCHAE - 2 BACTERIA - 15 METAZOA - 188 FUNGI - 17 PLANTS - 148 VIRUSES - 0 OTHER EUKARYOTES - 113 (SOURCE NCBI BLINK)
AT1G31360

Predicted

in vitro

two hybrid

FSW = 0.0378

Unknown

RECQL2 (ARABIDOPSIS RECQ HELICASE L2) 3-5 DNA HELICASE/ ATP-DEPENDENT HELICASE/ FOUR-WAY JUNCTION HELICASE/ PROTEIN BINDING
AT3G22950

Predicted

in vitro

FSW = 0.0148

Unknown

ATARFC1 (ADP-RIBOSYLATION FACTOR C1) GTP BINDING
AT5G19000

Predicted

Affinity Capture-MS

FSW = 0.0396

Unknown

ATBPM1 (BTB-POZ AND MATH DOMAIN 1) PROTEIN BINDING
AT1G09270

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1329

Unknown

IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER
AT3G05720

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1730

Unknown

IMPA-7 (IMPORTIN ALPHA ISOFORM 7) BINDING / PROTEIN TRANSPORTER
AT5G52000

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.2353

Unknown

IMPA-8 (IMPORTIN ALPHA ISOFORM 8) BINDING / PROTEIN TRANSPORTER
AT1G02690

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.0675

Unknown

IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454