Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G49480 - ( ATCP1 (Ca2+-binding protein 1) calcium ion binding )

34 Proteins interacs with AT5G49480
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G27030

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7536

Unknown

CAM5 (CALMODULIN 5) CALCIUM ION BINDING
AT1G12310

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.8007

Unknown

CALMODULIN PUTATIVE
AT1G76650

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9706

Unknown

CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT5G37770

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.9706

Unknown

TCH2 (TOUCH 2) CALCIUM ION BINDING
AT3G50360

Predicted

Phylogenetic profile method

FSW = 0.7692

Unknown

ATCEN2 (CENTRIN2) CALCIUM ION BINDING
AT1G66410

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2834

Unknown

CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER
AT3G43810

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.2562

Unknown

CAM7 (CALMODULIN 7) CALCIUM ION BINDING
AT1G18210

Predicted

Phylogenetic profile method

FSW = 0.2137

Unknown

CALCIUM-BINDING PROTEIN PUTATIVE
AT4G37010

Predicted

Phylogenetic profile method

FSW = 0.8750

Unknown

CALTRACTIN PUTATIVE / CENTRIN PUTATIVE
AT4G03290

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9561

Unknown

CALCIUM-BINDING PROTEIN PUTATIVE
AT1G24620

Predicted

Phylogenetic profile method

FSW = 0.2715

Unknown

POLCALCIN PUTATIVE / CALCIUM-BINDING POLLEN ALLERGEN PUTATIVE
AT1G62820

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9284

Unknown

CALMODULIN PUTATIVE
AT5G37780Predicted

Shared biological function

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.9420

Unknown

CAM1 (CALMODULIN 1) CALCIUM ION BINDING
AT3G03000

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9420

Unknown

CALMODULIN PUTATIVE
AT2G36180

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9561

Unknown

CALMODULIN-RELATED PROTEIN PUTATIVE
AT3G03400

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9706

Unknown

CALMODULIN-RELATED PROTEIN PUTATIVE
AT1G32250

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9855

Unknown

CALMODULIN PUTATIVE
AT3G03410

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9706

Unknown

CALMODULIN-RELATED PROTEIN PUTATIVE
AT1G05990

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9706

Unknown

CALCIUM-BINDING PROTEIN PUTATIVE
AT1G18530

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9420

Unknown

CALMODULIN PUTATIVE
AT4G12860

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9706

Unknown

UNE14 (UNFERTILIZED EMBRYO SAC 14) CALCIUM ION BINDING
AT3G51920

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.3703

Unknown

CAM9 (CALMODULIN 9) CALCIUM ION BINDING
AT2G41110Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.9420

Unknown

CAM2 (CALMODULIN 2) CALCIUM ION BINDING / PROTEIN BINDING
AT4G14640

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.4299

Unknown

CAM8 (CALMODULIN 8) CALCIUM ION BINDING
AT3G22930

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9706

Unknown

CALMODULIN PUTATIVE
AT5G17470

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9420

Unknown

CALMODULIN-RELATED PROTEIN PUTATIVE
AT3G07490

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9706

Unknown

AGD11 (ARF-GAP DOMAIN 11) CALCIUM ION BINDING
AT1G76640

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9552

Unknown

CALMODULIN-RELATED PROTEIN PUTATIVE
AT3G25600

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9706

Unknown

CALCIUM ION BINDING
AT1G66400

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9420

Unknown

CALMODULIN-RELATED PROTEIN PUTATIVE
AT1G73630

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9855

Unknown

CALCIUM-BINDING PROTEIN PUTATIVE
AT3G56800Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9561

Unknown

CAM3 (CALMODULIN 3) CALCIUM ION BINDING
AT5G21274

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.3463

Unknown

CAM6 (CALMODULIN 6) CALCIUM ION BINDING
AT1G21550

Predicted

Phylogenetic profile method

FSW = 0.9284

Unknown

CALCIUM-BINDING PROTEIN PUTATIVE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454