Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G49550 - ( unknown protein )

10 Proteins interacs with AT5G49550
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G14960

Predicted

two hybrid

FSW = 0.0111

Unknown

TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G75990

Predicted

two hybrid

FSW = 0.0193

Unknown

26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3)
AT3G10380

Predicted

two hybrid

FSW = 0.1131

Unknown

SEC8 (SUBUNIT OF EXOCYST COMPLEX 8)
AT5G14170

Predicted

two hybrid

FSW = 0.0166

Unknown

CHC1
AT1G18660

Predicted

two hybrid

FSW = 0.0356

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT1G55830Predicted

two hybrid

FSW = 0.0800

Unknown

UNKNOWN PROTEIN
AT1G78010

Predicted

two hybrid

FSW = 0.0863

Unknown

TRNA MODIFICATION GTPASE PUTATIVE
AT3G47120

Predicted

two hybrid

FSW = 0.0193

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G27140

Predicted

two hybrid

FSW = 0.0863

Unknown

SAR DNA-BINDING PROTEIN PUTATIVE
AT2G30330

Predicted

Affinity Capture-Western

two hybrid

FSW = 0.0800

Unknown

GCN5L1 FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454