Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G49830 - ( LOCATED IN plasma membrane EXPRESSED IN 23 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Vps51/Vps67 (InterProIPR014812) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT1G103851) Has 257 Blast hits to 210 proteins in 83 species Archae - 0 Bacteria - 0 Metazoa - 133 Fungi - 61 Plants - 56 Viruses - 2 Other Eukaryotes - 5 (source NCBI BLink) )

7 Proteins interacs with AT5G49830
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G12370

Predicted

in vivo

in vitro

FSW = 0.1056

Class C:

plasma membrane

 SEC10 (EXOCYST COMPLEX COMPONENT SEC10)
AT1G71820

Predicted

in vitro

in vivo

in vivo

in vitro

FSW = 0.0824

Class C:

plasma membrane

 SEC6
AT4G16420

Predicted

two hybrid

FSW = 0.0151

Unknown

 ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR
AT3G12280

Predicted

Phenotypic Enhancement

FSW = 0.0078

Unknown

 RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT3G56640

Predicted

in vivo

in vivo

FSW = 0.0449

Unknown

 EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN
AT2G26210

Predicted

two hybrid

FSW = 0.1214

Unknown

 ANKYRIN REPEAT FAMILY PROTEIN
AT5G52350

Predicted

in vivo

FSW = 0.1973

Unknown

 ATEXO70A3 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A3) PROTEIN BINDING

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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