Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G50320 - ( ELO3 (ELONGATA 3) histone acetyltransferase )

71 Proteins interacs with AT5G50320
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G33210

Predicted

pull down

FSW = 0.0046

Unknown

HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING
AT1G07660Predicted

Phenotypic Enhancement

FSW = 0.0452

Unknown

HISTONE H4
AT2G28190

Predicted

Phenotypic Enhancement

FSW = 0.1154

Unknown

CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE
AT1G12520

Predicted

Phenotypic Enhancement

FSW = 0.1002

Unknown

ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE
AT5G63110

Predicted

Synthetic Lethality

FSW = 0.1259

Unknown

HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT1G11890

Predicted

Phenotypic Enhancement

FSW = 0.1232

Unknown

SEC22 TRANSPORTER
AT4G34580

Predicted

Synthetic Lethality

FSW = 0.0205

Unknown

COW1 (CAN OF WORMS1) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER
AT1G20090

Predicted

Synthetic Lethality

FSW = 0.0264

Unknown

ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING
AT4G35020

Predicted

Synthetic Lethality

FSW = 0.0228

Unknown

ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE
AT4G26110

Predicted

Synthetic Lethality

FSW = 0.0617

Unknown

NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING
AT2G19480

Predicted

Synthetic Lethality

FSW = 0.0769

Unknown

NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING
AT1G20970Predicted

Synthetic Rescue

FSW = 0.0780

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE VACUOLE EXPRESSED IN GUARD CELL CULTURED CELL BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PPI1 (PROTON PUMP INTERACTOR 1) PROTEIN BINDING (TAIRAT4G275001) HAS 53409 BLAST HITS TO 33585 PROTEINS IN 1572 SPECIES ARCHAE - 464 BACTERIA - 7066 METAZOA - 25076 FUNGI - 5173 PLANTS - 1740 VIRUSES - 257 OTHER EUKARYOTES - 13633 (SOURCE NCBI BLINK)
AT5G57015

Predicted

synthetic growth defect

Affinity Capture-MS

FSW = 0.0130

Unknown

CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G03930

Predicted

Affinity Capture-MS

synthetic growth defect

FSW = 0.0243

Unknown

ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE
AT5G67270

Predicted

Synthetic Lethality

interaction prediction

Co-expression

FSW = 0.1318

Unknown

ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT3G54610

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

Synthetic Lethality

Phenotypic Suppression

Co-expression

FSW = 0.1517

Unknown

GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT3G16980

Predicted

Synthetic Lethality

FSW = 0.1125

Unknown

NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT1G02680

Predicted

Phenotypic Enhancement

FSW = 0.0370

Unknown

TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR
AT2G43810

Predicted

Phenotypic Enhancement

FSW = 0.0751

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT4G17020

Predicted

Phenotypic Enhancement

FSW = 0.0255

Unknown

TRANSCRIPTION FACTOR-RELATED
AT3G13940

Predicted

Phenotypic Suppression

FSW = 0.0868

Unknown

DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT4G10710

Predicted

synthetic growth defect

FSW = 0.1060

Unknown

SPT16 (GLOBAL TRANSCRIPTION FACTOR C)
AT4G10670

Predicted

synthetic growth defect

FSW = 0.1170

Unknown

GTC2
AT4G38130

Predicted

Synthetic Lethality

Co-expression

FSW = 0.0985

Unknown

HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING
AT2G47620

Predicted

Phenotypic Enhancement

FSW = 0.0629

Unknown

ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING
AT2G15430

Predicted

Phenotypic Enhancement

FSW = 0.1231

Unknown

NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G55750

Predicted

Phenotypic Enhancement

FSW = 0.0216

Unknown

TRANSCRIPTION FACTOR-RELATED
AT2G06210

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1528

Unknown

ELF8 (EARLY FLOWERING 8) BINDING
AT2G44950

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1964

Unknown

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT1G75510

Predicted

Phenotypic Enhancement

FSW = 0.1176

Unknown

TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN
AT5G66020

Predicted

Phenotypic Enhancement

FSW = 0.0588

Unknown

ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE
AT3G47690

Predicted

Synthetic Lethality

FSW = 0.1286

Unknown

ATEB1A MICROTUBULE BINDING
AT2G31970

Predicted

Phenotypic Suppression

FSW = 0.0732

Unknown

RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT5G19910

Predicted

Phenotypic Enhancement

FSW = 0.1961

Unknown

SOH1 FAMILY PROTEIN
AT1G11780

Predicted

pull down

FSW = 0.0436

Unknown

OXIDOREDUCTASE 2OG-FE(II) OXYGENASE FAMILY PROTEIN
AT3G11220

Predicted

in vitro

FSW = 0.0541

Unknown

PAXNEB PROTEIN-RELATED
AT5G20680

Predicted

in vitro

FSW = 0.0541

Unknown

UNKNOWN PROTEIN
AT1G08780

Predicted

Phenotypic Enhancement

FSW = 0.0954

Unknown

AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G13870

Predicted

co-fractionation

Co-fractionation

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

co-fractionation

Co-fractionation

interaction prediction

FSW = 0.1241

Unknown

DRL1 (DEFORMED ROOTS AND LEAVES 1) CALMODULIN BINDING / PURINE NUCLEOTIDE BINDING
AT1G15780

Predicted

Synthetic Lethality

FSW = 0.1714

Unknown

UNKNOWN PROTEIN
AT1G29990

Predicted

Phenotypic Enhancement

FSW = 0.0605

Unknown

PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G34150

Predicted

Phenotypic Enhancement

FSW = 0.1968

Unknown

TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT1G49540

Predicted

Co-purification

Co-purification

Co-purification

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Suppression

interaction prediction

FSW = 0.6506

Unknown

NUCLEOTIDE BINDING
AT1G52740

Predicted

biochemical

FSW = 0.2652

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G59890

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1842

Unknown

SNL5 (SIN3-LIKE 5)
AT1G61040

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1672

Unknown

VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT1G63160

Predicted

Phenotypic Enhancement

FSW = 0.0084

Unknown

REPLICATION FACTOR C 40 KDA PUTATIVE
AT1G64550

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.0168

Unknown

ATGCN3 TRANSPORTER
AT1G79730

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

Co-expression

FSW = 0.2296

Unknown

ELF7 (EARLY FLOWERING 7)
AT2G15910

Predicted

Affinity Capture-Western

synthetic growth defect

FSW = 0.0120

Unknown

CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN
AT3G10070

Predicted

Phenotypic Enhancement

FSW = 0.0686

Unknown

TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT3G22142

Predicted

Phenotypic Enhancement

FSW = 0.1143

Unknown

STRUCTURAL CONSTITUENT OF CELL WALL
AT3G22590

Predicted

Synthetic Lethality

FSW = 0.1762

Unknown

RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT5G10390Predicted

Synthetic Lethality

FSW = 0.0703

Unknown

HISTONE H3
AT5G13680

Predicted

co-fractionation

Co-fractionation

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Phenotypic Suppression

co-fractionation

Co-fractionation

interaction prediction

Co-expression

FSW = 0.5106

Unknown

ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR
AT5G14050

Predicted

Affinity Capture-MS

FSW = 0.0037

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G45600

Predicted

Phenotypic Enhancement

FSW = 0.1664

Unknown

GAS41 PROTEIN BINDING
AT1G04160

Predicted

Synthetic Lethality

FSW = 0.0180

Unknown

XIB (MYOSIN XI B) MOTOR
AT1G54140

Predicted

Affinity Capture-MS

FSW = 0.1690

Unknown

TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT2G02760

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1464

Unknown

ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT3G21060

Predicted

Synthetic Lethality

FSW = 0.2080

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G10270

Predicted

Synthetic Lethality

FSW = 0.1812

Unknown

CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT5G10790

Predicted

Synthetic Lethality

FSW = 0.1224

Unknown

UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING
AT5G58003

Predicted

Synthetic Lethality

FSW = 0.1268

Unknown

CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) PHOSPHOPROTEIN PHOSPHATASE
AT5G59140

Predicted

Phenotypic Enhancement

FSW = 0.0080

Unknown

SKP1 FAMILY PROTEIN
AT1G09200Predicted

Phenotypic Enhancement

FSW = 0.1039

Unknown

HISTONE H3
AT1G55255Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

FSW = 0.0800

Unknown

HISTONE H3
AT1G14400

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0917

Unknown

UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT3G49660

Predicted

Synthetic Lethality

FSW = 0.0720

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G10450

Predicted

Synthetic Lethality

FSW = 0.1591

Unknown

SNL6 (SIN3-LIKE 6)
AT1G20320

Predicted

Synthetic Lethality

FSW = 0.1231

Unknown

NLI INTERACTING FACTOR (NIF) FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454