Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G50900 - ( armadillo/beta-catenin repeat family protein )
16 Proteins interacs with AT5G50900Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G51260 | Predictedtwo hybrid | FSW = 0.0153
| Unknown | PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G67630 | PredictedPhenotypic Enhancement | FSW = 0.0222
| Unknown | DNA HELICASE PUTATIVE |
AT5G22330 | PredictedPhenotypic Suppression | FSW = 0.0269
| Unknown | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING |
AT3G48750 | PredictedPhenotypic Enhancement | FSW = 0.0134
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G06390 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.1082
| Unknown | GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1) GLYCOGEN SYNTHASE KINASE 3/ KINASE |
AT5G19310 | PredictedPhenotypic Suppression | FSW = 0.0314
| Unknown | HOMEOTIC GENE REGULATOR PUTATIVE |
AT2G33610 | PredictedPhenotypic Suppression | FSW = 0.0847
| Unknown | ATSWI3B (SWITCH SUBUNIT 3) DNA BINDING |
AT1G08700 | PredictedPhenotypic Suppression | FSW = 0.1203
| Unknown | PRESENILIN FAMILY PROTEIN |
AT2G29050 | PredictedPhenotypic Enhancement | FSW = 0.1053
| Unknown | ATRBL1 (ARABIDOPSIS THALIANA RHOMBOID-LIKE 1) |
AT4G38470 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.1053
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G47230 | PredictedPhenotypic Enhancement | FSW = 0.0514
| Unknown | CYCLIN PUTATIVE |
AT1G17720 | PredictedPhenotypic Enhancement | FSW = 0.0353
| Unknown | ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G79000 | PredictedPhenotypic Suppression | FSW = 0.0462
| Unknown | HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR |
AT2G45720 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1296
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN |
AT1G61350 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1296
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN |
AT1G01830 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1296
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454