Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G51940 - ( NRPB6A DNA binding / DNA-directed RNA polymerase )
43 Proteins interacs with AT5G51940| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G21720
   | PredictedSynthetic Rescue | FSW = 0.0178
| Unknown | PBC1 (PROTEASOME BETA SUBUNIT C1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT2G45300
| PredictedPhenotypic Enhancement | FSW = 0.0119
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
| AT4G35800
| Predictedin vitroAffinity Capture-MSAffinity Capture-Westernfar western blottingCo-purificationAffinity Capture-MSAffinity Capture-MSinterologs mappingSynthetic LethalitySynthetic Lethalityinterologs mappingCo-crystal StructureAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSSynthetic LethalityAffinity Capture-MSCo-crystal Structureinterologs mappingCo-purificationinteraction predictionEnriched domain pairCo-expression | FSW = 0.2005
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT5G12480
| Predictedbiochemical | FSW = 0.0035
| Unknown | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT1G21700
| PredictedPhenotypic Enhancement | FSW = 0.0207
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
| AT3G57660
| Predictedinterologs mappingAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction predictionEnriched domain pairCo-expression | FSW = 0.2414
| Unknown | NRPA1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ ZINC ION BINDING |
| AT3G16980
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationinteraction predictionCo-expression | FSW = 0.2874
| Unknown | NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
| AT5G35910
| PredictedSynthetic Rescue | FSW = 0.0535
| Unknown | 3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN |
| AT3G13940
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1482
| Unknown | DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT3G25940
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2667
| Unknown | TRANSCRIPTION FACTOR S-II (TFIIS) DOMAIN-CONTAINING PROTEIN |
| AT4G31720
| Predictedtwo hybrid | FSW = 0.0294
| Unknown | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
| AT2G15430
| Predictedin vitroAffinity Capture-WesternReconstituted ComplexAffinity Capture-WesternAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSCo-purificationReconstituted Complex | FSW = 0.2589
| Unknown | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
| AT4G08350
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2065
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
| AT5G18620
| PredictedPhenotypic Enhancement | FSW = 0.0497
| Unknown | CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING |
| AT1G75510
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.3088
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN |
| AT5G59180
| Predictedin vitroAffinity Capture-MSAffinity Capture-MSfar western blottingCo-purificationCo-expression | FSW = 0.4447
| Unknown | NRPB7 DNA-DIRECTED RNA POLYMERASE/ RNA BINDING |
| AT3G52090
| PredictedAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3716
| Unknown | NRPB11 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT4G21710
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSCo-crystal Structurefar western blottingCo-purificationinteraction predictionEnriched domain pairCo-expression | FSW = 0.2848
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT2G15400
| Predictedin vitro | FSW = 0.3048
| Unknown | NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
| AT1G61700
| PredictedAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.5959
| Unknown | DNA-DIRECTED RNA POLYMERASE II PUTATIVE (RPB10) |
| AT2G29540
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1145
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
| AT3G22320
| Predictedin vitroAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSCo-purificationfar western blottingCo-expression | FSW = 0.4786
| Unknown | NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT5G41910
| PredictedAffinity Capture-MS | FSW = 0.2523
| Unknown | RNA POLYMERASE II MEDIATOR COMPLEX PROTEIN-RELATED |
| AT5G57980
| Predictedin vitro | FSW = 0.0744
| Unknown | RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT C) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT1G09020
| PredictedPhenotypic Enhancement | FSW = 0.0693
| Unknown | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR |
| AT1G23260
| PredictedPhenotypic Enhancement | FSW = 0.0187
| Unknown | MMZ1 (MMS ZWEI HOMOLOGUE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT1G60620
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2402
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
| AT3G61740
| PredictedPhenotypic Suppression | FSW = 0.0124
| Unknown | SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
| AT5G41340
| PredictedPhenotypic Suppression | FSW = 0.1423
| Unknown | UBC4 (UBIQUITIN CONJUGATING ENZYME 4) UBIQUITIN-PROTEIN LIGASE |
| AT1G06790
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1838
| Unknown | RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN |
| AT1G15780
| Predictedtwo hybrid | FSW = 0.1319
| Unknown | UNKNOWN PROTEIN |
| AT1G29940 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2061
| Unknown | NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING |
| AT1G54250
| Predictedinterologs mappingAffinity Capture-MSfar western blottingCo-purification | FSW = 0.6036
| Unknown | NRPB8A DNA-DIRECTED RNA POLYMERASE |
| AT2G17510
| PredictedAffinity Capture-MS | FSW = 0.0443
| Unknown | EMB2763 (EMBRYO DEFECTIVE 2763) RNA BINDING / RIBONUCLEASE |
| AT2G18290
| Predictedtwo hybrid | FSW = 0.0094
| Unknown | ANAPHASE-PROMOTING COMPLEX SUBUNIT 10 FAMILY / APC10 FAMILY |
| AT5G41010
| PredictedAffinity Capture-MSCo-purification | FSW = 0.4325
| Unknown | NRPB12 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT5G45140
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2523
| Unknown | NRPC2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING |
| AT5G60040
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionEnriched domain pairCo-expression | FSW = 0.2578
| Unknown | NRPC1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING / ZINC ION BINDING |
| AT5G63670
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1482
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
| AT5G59140
| PredictedPhenotypic Suppression | FSW = 0.0274
| Unknown | SKP1 FAMILY PROTEIN |
| AT5G58003
| PredictedAffinity Capture-MS | FSW = 0.3346
| Unknown | CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) PHOSPHOPROTEIN PHOSPHATASE |
| AT5G13680
| Predictedinteraction prediction | FSW = 0.0912
| Unknown | ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR |
| AT2G04630
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.5752
| Unknown | NRPB6B DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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