Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G52210 - ( ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP binding )
95 Proteins interacs with AT5G52210Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G27090 | PredictedSynthetic Rescue | FSW = 0.1407
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14B) |
AT3G47520 | PredictedPhenotypic Enhancement | FSW = 0.0446
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT5G66680 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0724
| Unknown | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT3G49870 | PredictedPhylogenetic profile method | FSW = 0.1141
| Unknown | ATARLA1C (ADP-RIBOSYLATION FACTOR-LIKE A1C) GTP BINDING |
AT2G44610 | Predictedinteraction prediction | FSW = 0.0705
| Unknown | RAB6A GTP BINDING / PROTEIN BINDING |
AT3G62290 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2432
| Unknown | ATARFA1E (ADP-RIBOSYLATION FACTOR A1E) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT1G10630 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2653
| Unknown | ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F) GTP BINDING / COPPER ION BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT4G36750 | Predictedtwo hybrid | FSW = 0.0651
| Unknown | QUINONE REDUCTASE FAMILY PROTEIN |
AT1G31780 | PredictedSynthetic Lethalityinterologs mappingPhenotypic Enhancementinteraction prediction | FSW = 0.1950
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT2G45200 | PredictedSynthetic Lethalityinterologs mappingPhenotypic Enhancementinteraction prediction | FSW = 0.2646
| Unknown | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT3G30390 | PredictedPhenotypic Suppression | FSW = 0.0487
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G67560 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3158
| Unknown | ATARLA1D (ADP-RIBOSYLATION FACTOR-LIKE A1D) GTP BINDING |
AT2G30710 | Predictedinteraction predictionSynthetic LethalitySynthetic Lethalityinterologs mappingPhenotypic Enhancement | FSW = 0.2222
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0270
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G25780 | PredictedAffinity Capture-MS | FSW = 0.0152
| Unknown | EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT3G07100 | PredictedPhenotypic Enhancement | FSW = 0.0863
| Unknown | PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE |
AT5G56030 | PredictedAffinity Capture-MS | FSW = 0.0116
| Unknown | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.0039
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT2G47170 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3009
| Unknown | ARF1A1C GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT2G24765 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2990
| Unknown | ARF3 (ADP-RIBOSYLATION FACTOR 3) PROTEIN BINDING |
AT1G11890 | Predictedinterologs mappingPhenotypic Suppression | FSW = 0.0902
| Unknown | SEC22 TRANSPORTER |
AT3G51460 | Predictedinterologs mapping | FSW = 0.0541
| Unknown | RHD4 (ROOT HAIR DEFECTIVE4) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-4-PHOSPHATE PHOSPHATASE |
AT4G34580 | PredictedSynthetic Lethality | FSW = 0.0547
| Unknown | COW1 (CAN OF WORMS1) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT5G52640 | Predictedsynthetic growth defectAffinity Capture-MS | FSW = 0.0155
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G26340 | PredictedPhenotypic EnhancementPhenotypic Enhancementsynthetic growth defectSynthetic Lethalitytwo hybrid | FSW = 0.0663
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G69850 | PredictedSynthetic Lethality | FSW = 0.0968
| Unknown | ATNRT12 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 12) CALCIUM ION BINDING / TRANSPORTER |
AT1G70490 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1579
| Unknown | ARFA1D GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT5G65940 | PredictedPhenotypic Enhancement | FSW = 0.0634
| Unknown | CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1) 3-HYDROXYISOBUTYRYL-COA HYDROLASE |
AT2G17520 | Predictedinterologs mappingPhenotypic Suppression | FSW = 0.0780
| Unknown | IRE1A ENDORIBONUCLEASE/ KINASE |
AT2G15240 | Predictedtwo hybridtwo hybridinteraction prediction | FSW = 0.0450
| Unknown | UNC-50 FAMILY PROTEIN |
AT3G10330 | Predictedinteraction prediction | FSW = 0.0091
| Unknown | TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2) |
AT2G43810 | PredictedPhenotypic Enhancement | FSW = 0.0302
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT2G41630 | Predictedtwo hybrid | FSW = 0.0083
| Unknown | TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING |
AT1G53165 | PredictedPhenotypic Enhancement | FSW = 0.1212
| Unknown | ATMAP4K ALPHA1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G29800 | PredictedPhenotypic Enhancement | FSW = 0.0853
| Unknown | AAA-TYPE ATPASE FAMILY |
AT2G22290 | PredictedSynthetic LethalitySynthetic Lethalityinterologs mapping | FSW = 0.0763
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT5G18280 | PredictedPhenotypic EnhancementSynthetic Lethalityinteraction prediction | FSW = 0.1378
| Unknown | ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) ATPASE/ NUCLEOTIDE DIPHOSPHATASE |
AT4G33730 | PredictedPhenotypic Enhancement | FSW = 0.1083
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G54840 | Predictedtwo hybrid | FSW = 0.0212
| Unknown | ARA6 GTP BINDING / GTPASE |
AT1G32210 | PredictedSynthetic Lethality | FSW = 0.0227
| Unknown | ATDAD1 (DEFENDER AGAINST APOPTOTIC DEATH 1) |
AT3G05710 | PredictedSynthetic Lethalityinterologs mappingPhenotypic Enhancementinteraction prediction | FSW = 0.1882
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT5G66020 | PredictedPhenotypic Enhancement | FSW = 0.0819
| Unknown | ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
AT5G38460 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1550
| Unknown | ALG6 ALG8 GLYCOSYLTRANSFERASE FAMILY PROTEIN |
AT5G28060 | PredictedPhenotypic Enhancement | FSW = 0.0808
| Unknown | 40S RIBOSOMAL PROTEIN S24 (RPS24B) |
AT4G15900 | PredictedPhenotypic Enhancementtwo hybrid | FSW = 0.0513
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G10030 | Predictedinteraction prediction | FSW = 0.0260
| Unknown | ERG28 (ARABIDOPSIS HOMOLOG OF YEAST ERGOSTEROL28) |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0058
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G08750 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0461
| Unknown | GPI-ANCHOR TRANSAMIDASE PUTATIVE |
AT1G18830 | PredictedPhenotypic Enhancement | FSW = 0.1407
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G26450 | PredictedPhenotypic Enhancement | FSW = 0.1204
| Unknown | BETA-13-GLUCANASE-RELATED |
AT1G48760 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2524
| Unknown | DELTA-ADR (DELTA-ADAPTIN) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT1G61670 | PredictedPhenotypic Enhancement | FSW = 0.0940
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK) |
AT1G79990 | PredictedPhenotypic Enhancement | FSW = 0.1013
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT1G80500 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.0646
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK) |
AT2G29190 | PredictedPhenotypic Enhancement | FSW = 0.1401
| Unknown | APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING |
AT2G32765 | PredictedPhenotypic Suppression | FSW = 0.0648
| Unknown | SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) PROTEIN TAG |
AT3G12180 | PredictedPhenotypic Enhancement | FSW = 0.1655
| Unknown | CORNICHON FAMILY PROTEIN |
AT3G19450 | PredictedSynthetic Lethality | FSW = 0.0642
| Unknown | ATCAD4 CINNAMYL-ALCOHOL DEHYDROGENASE |
AT3G50860 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1530
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
AT3G53650 | PredictedPhenotypic Enhancement | FSW = 0.0405
| Unknown | HISTONE H2B PUTATIVE |
AT4G17890 | PredictedSynthetic Lethality | FSW = 0.0858
| Unknown | AGD8 (ARF-GAP DOMAIN 8) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT4G22330 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0182
| Unknown | ATCES1 CATALYTIC/ HYDROLASE ACTING ON CARBON-NITROGEN (BUT NOT PEPTIDE) BONDS IN LINEAR AMIDES |
AT4G29330 | PredictedPhenotypic Suppression | FSW = 0.0204
| Unknown | DER1 (DERLIN-1) |
AT5G10260 | PredictedSynthetic LethalitySynthetic Lethalityinterologs mapping | FSW = 0.0610
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G25520 | PredictedSynthetic Lethality | FSW = 0.0705
| Unknown | TRANSCRIPTION ELONGATION FACTOR-RELATED |
AT5G27970 | PredictedSynthetic Lethalityinterologs mappingPhenotypic Enhancementinteraction prediction | FSW = 0.0888
| Unknown | BINDING |
AT1G71530 | Predictedtwo hybrid | FSW = 0.0464
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G29060 | Predictedtwo hybrid | FSW = 0.0968
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 6 PLANT STRUCTURES EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE 4 ANTHESIS PETAL DIFFERENTIATION AND EXPANSION STAGE CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G140401) HAS 970 BLAST HITS TO 889 PROTEINS IN 159 SPECIES ARCHAE - 2 BACTERIA - 5 METAZOA - 379 FUNGI - 260 PLANTS - 176 VIRUSES - 28 OTHER EUKARYOTES - 120 (SOURCE NCBI BLINK) |
AT3G61210 | Predictedtwo hybrid | FSW = 0.0206
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT4G30820 | Predictedtwo hybrid | FSW = 0.0213
| Unknown | CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED / CDK-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED |
AT5G19090 | Predictedtwo hybrid | FSW = 0.0336
| Unknown | HEAVY-METAL-ASSOCIATED DOMAIN-CONTAINING PROTEIN |
AT5G53120 | PredictedPhenotypic Enhancement | FSW = 0.0699
| Unknown | SPDS3 (SPERMIDINE SYNTHASE 3) SPERMIDINE SYNTHASE/ SPERMINE SYNTHASE |
AT5G57190 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.2393
| Unknown | PSD2 (PHOSPHATIDYLSERINE DECARBOXYLASE 2) PHOSPHATIDYLSERINE DECARBOXYLASE |
AT5G65690 | PredictedPhenotypic Enhancement | FSW = 0.0908
| Unknown | PCK2 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 2) ATP BINDING / PHOSPHOENOLPYRUVATE CARBOXYKINASE (ATP)/ PHOSPHOENOLPYRUVATE CARBOXYKINASE/ PURINE NUCLEOTIDE BINDING |
AT1G52360 | Predictedinterologs mapping | FSW = 0.0713
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
AT3G04080 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.1368
| Unknown | ATAPY1 (APYRASE 1) ATPASE/ CALMODULIN BINDING / NUCLEOTIDE DIPHOSPHATASE |
AT1G09460 | Predictedinterologs mapping | FSW = 0.1004
| Unknown | GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED |
AT1G12340 | Predictedinterologs mapping | FSW = 0.1425
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR SIGNALING CASCADE LOCATED IN MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S CORNICHON (INTERPROIPR003377) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CORNICHON FAMILY PROTEIN (TAIRAT1G123901) HAS 463 BLAST HITS TO 463 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 278 FUNGI - 110 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 34 (SOURCE NCBI BLINK) |
AT3G44340 | Predictedinterologs mappingEnriched domain pairCo-expression | FSW = 0.0746
| Unknown | CEF (CLONE EIGHTY-FOUR) PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT4G04860 | Predictedinterologs mapping | FSW = 0.0327
| Unknown | DER22 (DERLIN-22) |
AT2G35210 | PredictedSynthetic Lethality | FSW = 0.0634
| Unknown | RPA (ROOT AND POLLEN ARFGAP) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT1G51160 | PredictedSynthetic Lethality | FSW = 0.0376
| Unknown | SYNBINDIN PUTATIVE |
AT5G46750 | Predictedinteraction prediction | FSW = 0.0543
| Unknown | AGD9 (ARF-GAP DOMAIN 9) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT4G29170 | Predictedinteraction prediction | FSW = 0.0096
| Unknown | ATMND1 |
AT3G22950 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2692
| Unknown | ATARFC1 (ADP-RIBOSYLATION FACTOR C1) GTP BINDING |
AT5G17060 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3009
| Unknown | ATARFB1B GTP BINDING |
AT1G23490 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2842
| Unknown | ATARF1 (ADP-RIBOSYLATION FACTOR 1) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT3G03120 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3009
| Unknown | ATARFB1C (ADP-RIBOSYLATION FACTOR B1C) GTP BINDING |
AT5G14670 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1927
| Unknown | ATARFA1B (ADP-RIBOSYLATION FACTOR A1B) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT2G15310 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.2857
| Unknown | ATARFB1A (ADP-RIBOSYLATION FACTOR B1A) GTP BINDING |
AT5G37680 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3304
| Unknown | ATARLA1A (ADP-RIBOSYLATION FACTOR-LIKE A1A) GTP BINDING |
AT3G49860 | PredictedPhylogenetic profile method | FSW = 0.3158
| Unknown | ATARLA1B (ADP-RIBOSYLATION FACTOR-LIKE A1B) GTP BINDING |
AT1G02440 | PredictedPhylogenetic profile method | FSW = 0.3009
| Unknown | ATARFD1A (ADP-RIBOSYLATION FACTOR D1A) GTP BINDING |
AT2G18390 | PredictedPhylogenetic profile method | FSW = 0.0985
| Unknown | TTN5 (TITAN 5) GTP BINDING / GTPASE |
AT1G02430 | PredictedPhylogenetic profile method | FSW = 0.3158
| Unknown | ATARFD1B (ADP-RIBOSYLATION FACTOR D1B) GTP BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454