Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G52350 - ( ATEXO70A3 (exocyst subunit EXO70 family protein A3) protein binding )

11 Proteins interacs with AT5G52350
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G49830

Predicted

in vivo

FSW = 0.1973

Unknown

LOCATED IN PLASMA MEMBRANE EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S VPS51/VPS67 (INTERPROIPR014812) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G103851) HAS 257 BLAST HITS TO 210 PROTEINS IN 83 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 133 FUNGI - 61 PLANTS - 56 VIRUSES - 2 OTHER EUKARYOTES - 5 (SOURCE NCBI BLINK)
AT4G13010

Predicted

two hybrid

FSW = 0.1262

Unknown

OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN
AT2G33340

Predicted

two hybrid

FSW = 0.0088

Unknown

NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G18870

Predicted

two hybrid

FSW = 0.0220

Unknown

ICS2 (ISOCHORISMATE SYNTHASE 2) ISOCHORISMATE SYNTHASE
AT1G50310

Predicted

Affinity Capture-Western

Affinity Capture-Western

FSW = 0.0459

Unknown

STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT5G45970

Predicted

Affinity Capture-Western

two hybrid

FSW = 0.0159

Unknown

ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING
AT3G56760

Predicted

Affinity Capture-Western

FSW = 0.1109

Unknown

CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE
AT3G29130

Predicted

two hybrid

FSW = 0.0745

Unknown

UNKNOWN PROTEIN
AT2G26210

Predicted

two hybrid

FSW = 0.0863

Unknown

ANKYRIN REPEAT FAMILY PROTEIN
AT3G44590

Predicted

Affinity Capture-Western

FSW = 0.1177

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2D)
AT1G27320

Predicted

Affinity Capture-MS

FSW = 0.0117

Unknown

AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454