Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT5G52650 - ( 40S ribosomal protein S10 (RPS10C) )
26 Proteins interacs with AT5G52650Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G37270 | PredictedAffinity Capture-MS | FSW = 0.0612
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G07770 | PredictedAffinity Capture-MS | FSW = 0.1182
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G18070 | PredictedAffinity Capture-MS | FSW = 0.0245
| Unknown | EF-1-ALPHA-RELATED GTP-BINDING PROTEIN PUTATIVE |
AT2G09990 | PredictedAffinity Capture-MS | FSW = 0.1243
| Unknown | 40S RIBOSOMAL PROTEIN S16 (RPS16A) |
AT3G15000 | Predictedtwo hybrid | FSW = 0.0394
| Unknown | LOCATED IN MITOCHONDRION EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PLASTID DEVELOPMENTAL PROTEIN DAG PUTATIVE (TAIRAT3G067902) HAS 50779 BLAST HITS TO 24732 PROTEINS IN 941 SPECIES ARCHAE - 10 BACTERIA - 4862 METAZOA - 25623 FUNGI - 7071 PLANTS - 6957 VIRUSES - 900 OTHER EUKARYOTES - 5356 (SOURCE NCBI BLINK) |
AT5G58230 | PredictedAffinity Capture-MS | FSW = 0.0188
| Unknown | MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING |
AT4G00100 | PredictedAffinity Capture-MS | FSW = 0.1108
| Unknown | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G08450 | Predictedtwo hybrid | FSW = 0.0368
| Unknown | CRT3 (CALRETICULIN 3) CALCIUM ION BINDING / UNFOLDED PROTEIN BINDING |
AT5G52640 | PredictedSynthetic Lethality | FSW = 0.0080
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G62300 | PredictedAffinity Capture-MS | FSW = 0.0585
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT3G53870 | PredictedAffinity Capture-MS | FSW = 0.0756
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT3G11400 | PredictedAffinity Capture-MS | FSW = 0.0492
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 3G / EIF3G |
AT2G39990 | Predictedtwo hybrid | FSW = 0.0394
| Unknown | EIF2 TRANSLATION INITIATION FACTOR |
AT4G19610 | PredictedAffinity Capture-MS | FSW = 0.0543
| Unknown | RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G62310 | PredictedAffinity Capture-MS | FSW = 0.0524
| Unknown | RNA HELICASE PUTATIVE |
AT5G02730 | Predictedtwo hybrid | FSW = 0.0062
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G09580 | Predictedtwo hybrid | FSW = 0.0920
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOPLASMIC RETICULUM EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SNARE ASSOCIATED GOLGI PROTEIN (INTERPROIPR015414) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G719401) HAS 2023 BLAST HITS TO 2023 PROTEINS IN 496 SPECIES ARCHAE - 2 BACTERIA - 1014 METAZOA - 198 FUNGI - 27 PLANTS - 131 VIRUSES - 0 OTHER EUKARYOTES - 651 (SOURCE NCBI BLINK) |
AT5G01670 | Predictedtwo hybrid | FSW = 0.0110
| Unknown | ALDOSE REDUCTASE PUTATIVE |
AT5G24420 | Predictedtwo hybrid | FSW = 0.0788
| Unknown | GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE-RELATED |
AT5G26680 | Predictedtwo hybrid | FSW = 0.0071
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G03790 | Predictedtwo hybrid | FSW = 0.0706
| Unknown | HB51 DNA BINDING / SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR |
AT1G32750 | PredictedAffinity Capture-MS | FSW = 0.0530
| Unknown | HAF01 DNA BINDING / HISTONE ACETYLTRANSFERASE |
AT1G54140 | PredictedSynthetic Lethality | FSW = 0.0461
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT3G24080 | PredictedAffinity Capture-MS | FSW = 0.1161
| Unknown | KRR1 FAMILY PROTEIN |
AT3G60240 | PredictedAffinity Capture-MS | FSW = 0.0284
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
AT5G66100 | PredictedAffinity Capture-MS | FSW = 0.0759
| Unknown | LA DOMAIN-CONTAINING PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454