Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT5G53000 - ( TAP46 (2A phosphatase associated protein of 46 kD) protein phosphatase type 2A regulator )
17 Proteins interacs with AT5G53000Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G10430 | Experimentaltwo hybridAffinity Capture-Western | FSW = 0.2667
| Unknown | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G19980 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexCo-purificationAffinity Capture-MSinterologs mappinginteraction prediction | FSW = 0.1011
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G25800 | PredictedPhenotypic Enhancement | FSW = 0.1538
| Unknown | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G13320 | PredictedPhenotypic Enhancement | FSW = 0.0690
| Unknown | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT2G42500 | PredictedAffinity Capture-WesternReconstituted ComplexAffinity Capture-MSAffinity Capture-Westerninteraction prediction | FSW = 0.3148
| Unknown | PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G26720 | PredictedReconstituted ComplexAffinity Capture-Western | FSW = 0.1765
| Unknown | PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G02530 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1668
| Unknown | CHAPERONIN PUTATIVE |
AT4G34270 | Predictedtwo hybridSynthetic Rescuesynthetic growth defectinteraction prediction | FSW = 0.1976
| Unknown | TIP41-LIKE FAMILY PROTEIN |
AT1G69960 | Predictedtwo hybridtwo hybridin vivoin vivoin vivotwo hybridCo-expression | FSW = 0.4444
| Unknown | PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0059
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT5G55260 | Predictedtwo hybridtwo hybrid | FSW = 0.3571
| Unknown | PPX2 (PROTEIN PHOSPHATASE X 2) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G50030 | PredictedbiochemicalCo-purification | FSW = 0.0805
| Unknown | TOR (TARGET OF RAPAMYCIN) 1-PHOSPHATIDYLINOSITOL-3-KINASE/ PROTEIN BINDING |
AT3G11830 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0591
| Unknown | CHAPERONIN PUTATIVE |
AT4G08960 | PredictedAffinity Capture-Western | FSW = 0.2984
| Unknown | PHOSPHOTYROSYL PHOSPHATASE ACTIVATOR (PTPA) FAMILY PROTEIN |
AT1G13180 | PredictedAffinity Capture-MS | FSW = 0.0190
| Unknown | DIS1 (DISTORTED TRICHOMES 1) ATP BINDING / ACTIN BINDING / PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G17720 | PredictedPhenotypic Enhancement | FSW = 0.1758
| Unknown | ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G50370 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSinterologs mappingReconstituted Complex | FSW = 0.2012
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454