Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G53470 - ( ACBP1 (ACYL-COA BINDING PROTEIN 1) acyl-CoA binding / lead ion binding )
15 Proteins interacs with AT5G53470Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G18750 | Experimentalbiochemical | FSW = 0.0556
| Class B:plasma membranenucleus | AGL65 (AGAMOUS-LIKE 65) DNA BINDING / TRANSCRIPTION FACTOR |
AT3G04120 | PredictedShared biological functionGene fusion method | FSW = 0.0421
| Class C:plasma membrane | GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT1G13440 | PredictedShared biological functionGene fusion method | FSW = 0.0702
| Class C:plasma membrane | GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT3G10670 | PredictedShared biological functionGene fusion method | FSW = 0.0529
| Unknown | ATNAP7 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTEIN BINDING / TRANSPORTER |
AT5G66120 | PredictedGene fusion method | FSW = 0.1481
| Unknown | 3-DEHYDROQUINATE SYNTHASE PUTATIVE |
AT5G07700 | PredictedShared biological functionGene fusion method | FSW = 0.0395
| Unknown | MYB76 (MYB DOMAIN PROTEIN 76) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G74100 | PredictedGene fusion method | FSW = 0.0395
| Unknown | SOT16 (SULFOTRANSFERASE 16) DESULFOGLUCOSINOLATE SULFOTRANSFERASE/ SULFOTRANSFERASE |
AT2G30730 | PredictedEnriched domain pairGene fusion methodCo-expression | FSW = 0.0585
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
AT1G09220 | PredictedGene fusion methodCo-expression | FSW = 0.0381
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT2G45630 | PredictedGene fusion method | FSW = 0.0426
| Unknown | OXIDOREDUCTASE FAMILY PROTEIN |
AT1G59560 | PredictedGene fusion method | FSW = 0.0381
| Unknown | ZCF61 PROTEIN BINDING / ZINC ION BINDING |
AT3G56920 | PredictedGene fusion method | FSW = 0.0410
| Unknown | ZINC FINGER (DHHC TYPE) FAMILY PROTEIN |
AT3G53305 | PredictedGene fusion method | FSW = 0.0381
| Unknown | CYP71B32 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT5G52590 | PredictedGene fusion method | FSW = 0.0585
| Unknown | CYP71B32 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT3G22700 | PredictedGene fusion method | FSW = 0.0410
| Unknown | F-BOX FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454