Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G53940 - ( yippee family protein )

23 Proteins interacs with AT5G53940
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G16240

Predicted

Synthetic Rescue

FSW = 0.0408

Unknown

SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR
AT3G30390

Predicted

Affinity Capture-Western

FSW = 0.0847

Unknown

AMINO ACID TRANSPORTER FAMILY PROTEIN
AT1G07890

Predicted

Synthetic Rescue

Affinity Capture-MS

FSW = 0.0556

Unknown

APX1 (ASCORBATE PEROXIDASE 1) L-ASCORBATE PEROXIDASE
AT3G02740

Predicted

Affinity Capture-MS

Co-purification

Affinity Capture-Western

FSW = 0.1189

Unknown

ASPARTYL PROTEASE FAMILY PROTEIN
AT4G04720

Predicted

Synthetic Rescue

FSW = 0.0070

Unknown

CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G46900

Predicted

Synthetic Rescue

FSW = 0.0082

Unknown

COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER
AT3G07260

Predicted

Synthetic Rescue

FSW = 0.0166

Unknown

FORKHEAD-ASSOCIATED DOMAIN-CONTAINING PROTEIN / FHA DOMAIN-CONTAINING PROTEIN
AT1G30000

Predicted

Reconstituted Complex

Affinity Capture-Western

FSW = 0.1815

Unknown

GLYCOSIDE HYDROLASE FAMILY 47 PROTEIN
AT3G54840

Predicted

Co-purification

Affinity Capture-Western

FSW = 0.0455

Unknown

ARA6 GTP BINDING / GTPASE
AT1G02970

Predicted

Dosage Growth Defect

FSW = 0.0580

Unknown

WEE1 (ARABIDOPSIS WEE1 KINASE HOMOLOG) KINASE/ PROTEIN KINASE
AT2G14880

Predicted

Synthetic Rescue

Affinity Capture-Western

FSW = 0.0718

Unknown

SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT3G16840

Predicted

Affinity Capture-Western

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

two hybrid

Affinity Capture-Western

Synthetic Lethality

FSW = 0.0901

Unknown

ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT3G19670Predicted

interologs mapping

FSW = 0.0143

Unknown

PROTEIN BINDING
AT1G13950

Predicted

Synthetic Lethality

FSW = 0.0387

Unknown

ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) TRANSLATION INITIATION FACTOR
AT2G16740

Predicted

Synthetic Lethality

FSW = 0.0077

Unknown

UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT3G62960

Predicted

Affinity Capture-MS

FSW = 0.0360

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT5G59490

Predicted

Affinity Capture-MS

FSW = 0.0192

Unknown

HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN
AT5G64760

Predicted

Synthetic Rescue

FSW = 0.0229

Unknown

RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)
AT3G55890

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2165

Unknown

YIPPEE FAMILY PROTEIN
AT3G08990

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1589

Unknown

YIPPEE FAMILY PROTEIN
AT3G11230

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.0533

Unknown

YIPPEE FAMILY PROTEIN
AT2G40110

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2087

Unknown

YIPPEE FAMILY PROTEIN
AT4G27745

Predicted

Phylogenetic profile method

FSW = 0.1634

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S YIPPEE-LIKE PROTEIN (INTERPROIPR004910) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS YIPPEE FAMILY PROTEIN (TAIRAT5G539401) HAS 697 BLAST HITS TO 697 PROTEINS IN 149 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 401 FUNGI - 132 PLANTS - 110 VIRUSES - 0 OTHER EUKARYOTES - 54 (SOURCE NCBI BLINK)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454