Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G54280 - ( ATM2 (ARABIDOPSIS THALIANA MYOSIN 2) motor )
15 Proteins interacs with AT5G54280Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G45970 | PredictedPhenotypic Suppression | FSW = 0.1167
| Class C:plasma membrane | ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING |
AT5G42570 | Predictedin vivo | FSW = 0.1722
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR PROTEIN TRANSPORT LOCATED IN ENDOPLASMIC RETICULUM PLASMA MEMBRANE EXPRESSED IN 26 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S B-CELL RECEPTOR-ASSOCIATED 31-LIKE (INTERPROIPR008417) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G119051) HAS 311 BLAST HITS TO 268 PROTEINS IN 81 SPECIES ARCHAE - 2 BACTERIA - 2 METAZOA - 134 FUNGI - 41 PLANTS - 73 VIRUSES - 0 OTHER EUKARYOTES - 59 (SOURCE NCBI BLINK) |
AT3G58160 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0381
| Unknown | XIJ MOTOR |
AT5G05620 | Predictedtwo hybrid | FSW = 0.0254
| Unknown | GCP2 (GAMMA-TUBULIN COMPLEX PROTEIN 2) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
AT1G69220 | PredictedAffinity Capture-MS | FSW = 0.0441
| Unknown | SIK1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G39740 | Predictedtwo hybrid | FSW = 0.0556
| Unknown | UNKNOWN PROTEIN |
AT4G17760 | Predictedtwo hybrid | FSW = 0.1067
| Unknown | DAMAGED DNA BINDING / EXODEOXYRIBONUCLEASE III |
AT5G23420 | Predictedtwo hybrid | FSW = 0.0758
| Unknown | HMGB6 TRANSCRIPTION FACTOR |
AT4G34540 | PredictedPhenotypic SuppressionPhenotypic Suppression | FSW = 0.0807
| Unknown | ISOFLAVONE REDUCTASE FAMILY PROTEIN |
AT5G06150 | PredictedPhenotypic Suppression | FSW = 0.0159
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G31450 | PredictedAffinity Capture-MS | FSW = 0.0556
| Unknown | ENDONUCLEASE-RELATED |
AT2G38280 | Predictedin vivo | FSW = 0.0444
| Unknown | FAC1 (EMBRYONIC FACTOR1) AMP DEAMINASE |
AT5G21170 | PredictedAffinity Capture-MS | FSW = 0.0189
| Unknown | 5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE |
AT4G21480 | PredictedAffinity Capture-MS | FSW = 0.0115
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G06400 | PredictedGene fusion method | FSW = 0.0443
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454