Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G54770 - ( THI1 protein homodimerization )

42 Proteins interacs with AT5G54770
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G42590

Experimental

FSW = 0.0045

Class B:

plastid

plasma membrane

peroxisome

nucleus

mitochondrion

cytosol

Class D:

cytosol (p = 0.67)

GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT3G46090

Experimental

FSW = 0.0076

Unknown

ZAT7 NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT1G53720

Experimental

pull down

FSW = 0.0115

Unknown

CYP59 (CYCLOPHILIN 59) RNA BINDING / NUCLEIC ACID BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT3G58610

Predicted

Phenotypic Enhancement

FSW = 0.1372

Class C:

plastid

mitochondrion

KETOL-ACID REDUCTOISOMERASE
AT2G17360

Predicted

Phenotypic Enhancement

FSW = 0.0588

Class C:

plastid

40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT3G56160Predicted

Synthetic Rescue

Synthetic Rescue

FSW = 0.1540

Class C:

plastid

BILE ACIDSODIUM SYMPORTER
AT5G53480

Predicted

two hybrid

interaction prediction

FSW = 0.0146

Class C:

plastid

IMPORTIN BETA-2 PUTATIVE
AT1G07180

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.0878

Class C:

mitochondrion

NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE
AT3G14270

Predicted

two hybrid

two hybrid

two hybrid

two hybrid

Phenotypic Enhancement

two hybrid

Phenotypic Enhancement

FSW = 0.2241

Class C:

mitochondrion

PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN
AT4G10040

Predicted

Phenotypic Enhancement

FSW = 0.0484

Class C:

mitochondrion

CYTC-2 (CYTOCHROME C-2) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING
AT1G55860

Predicted

synthetic growth defect

FSW = 0.0389

Class C:

mitochondrion

UPL1 (UBIQUITIN-PROTEIN LIGASE 1) UBIQUITIN-PROTEIN LIGASE
AT3G22110

Predicted

Phenotypic Enhancement

FSW = 0.0110

Unknown

PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G62870

Predicted

Affinity Capture-MS

FSW = 0.0230

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0041

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G04750

Predicted

Phenotypic Enhancement

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

interologs mapping

synthetic growth defect

FSW = 0.0909

Unknown

VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT4G04340

Predicted

two hybrid

two hybrid

two hybrid

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Phenotypic Enhancement

two hybrid

interologs mapping

FSW = 0.1857

Unknown

EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT3G43810

Predicted

Reconstituted Complex

interaction prediction

FSW = 0.0062

Unknown

CAM7 (CALMODULIN 7) CALCIUM ION BINDING
AT1G66410

Predicted

Reconstituted Complex

FSW = 0.0040

Unknown

CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER
AT4G14350

Predicted

Synthetic Rescue

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1528

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT3G49370

Predicted

Phenotypic Enhancement

FSW = 0.1931

Unknown

CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE
AT3G21700

Predicted

two hybrid

FSW = 0.0175

Unknown

SGP2 GTP BINDING
AT5G54840

Predicted

interaction prediction

FSW = 0.0123

Unknown

SGP1 GTP BINDING
AT4G35370Predicted

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.0978

Unknown

NUCLEOTIDE BINDING
AT2G36170Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1564

Unknown

UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A)
AT3G06720

Predicted

two hybrid

interaction prediction

FSW = 0.0158

Unknown

IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER
AT1G21700

Predicted

synthetic growth defect

Phenotypic Enhancement

synthetic growth defect

Phenotypic Enhancement

synthetic growth defect

FSW = 0.1532

Unknown

ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING
AT4G39200

Predicted

Phenotypic Enhancement

FSW = 0.0268

Unknown

40S RIBOSOMAL PROTEIN S25 (RPS25E)
AT2G05170

Predicted

Synthetic Lethality

FSW = 0.0712

Unknown

ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING
AT1G05180

Predicted

Phenotypic Enhancement

FSW = 0.2104

Unknown

AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME
AT1G31300

Predicted

Phenotypic Enhancement

FSW = 0.0559

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G196452) HAS 478 BLAST HITS TO 478 PROTEINS IN 104 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 269 FUNGI - 98 PLANTS - 80 VIRUSES - 0 OTHER EUKARYOTES - 31 (SOURCE NCBI BLINK)
AT1G55300

Predicted

Phenotypic Enhancement

FSW = 0.0210

Unknown

TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT1G75380

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.2225

Unknown

WOUND-RESPONSIVE PROTEIN-RELATED
AT2G27340

Predicted

Phenotypic Enhancement

FSW = 0.0365

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK)
AT4G00980

Predicted

Phenotypic Enhancement

FSW = 0.0099

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT4G21490

Predicted

interologs mapping

interologs mapping

Phenotypic Enhancement

interologs mapping

FSW = 0.1417

Unknown

NDB3 NADH DEHYDROGENASE
AT4G29580

Predicted

Synthetic Lethality

FSW = 0.0903

Unknown

CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE
AT5G01770

Predicted

Phenotypic Enhancement

interologs mapping

FSW = 0.1954

Unknown

RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING
AT5G16980

Predicted

interologs mapping

interologs mapping

Phenotypic Enhancement

Phenotypic Enhancement

interologs mapping

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

interologs mapping

FSW = 0.1536

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G38820

Predicted

Phenotypic Enhancement

FSW = 0.2092

Unknown

AMINO ACID TRANSPORTER FAMILY PROTEIN
AT3G43980Predicted

Synthetic Rescue

FSW = 0.1088

Unknown

40S RIBOSOMAL PROTEIN S29 (RPS29A)
AT3G47610

Predicted

interologs mapping

Synthetic Lethality

interologs mapping

FSW = 0.1113

Unknown

TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT1G02690

Predicted

two hybrid

FSW = 0.0171

Unknown

IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454