Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G54770 - ( THI1 protein homodimerization )
42 Proteins interacs with AT5G54770Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G42590 | Experimental | FSW = 0.0045
| Class B:plastidplasma membraneperoxisomenucleusmitochondrioncytosolClass D:cytosol (p = 0.67) | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G46090 | Experimental | FSW = 0.0076
| Unknown | ZAT7 NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G53720 | Experimentalpull down | FSW = 0.0115
| Unknown | CYP59 (CYCLOPHILIN 59) RNA BINDING / NUCLEIC ACID BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT3G58610 | PredictedPhenotypic Enhancement | FSW = 0.1372
| Class C:plastidmitochondrion | KETOL-ACID REDUCTOISOMERASE |
AT2G17360 | PredictedPhenotypic Enhancement | FSW = 0.0588
| Class C:plastid | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT3G56160 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.1540
| Class C:plastid | BILE ACIDSODIUM SYMPORTER |
AT5G53480 | Predictedtwo hybridinteraction prediction | FSW = 0.0146
| Class C:plastid | IMPORTIN BETA-2 PUTATIVE |
AT1G07180 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0878
| Class C:mitochondrion | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
AT3G14270 | Predictedtwo hybridtwo hybridtwo hybridtwo hybridPhenotypic Enhancementtwo hybridPhenotypic Enhancement | FSW = 0.2241
| Class C:mitochondrion | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN |
AT4G10040 | PredictedPhenotypic Enhancement | FSW = 0.0484
| Class C:mitochondrion | CYTC-2 (CYTOCHROME C-2) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING |
AT1G55860 | Predictedsynthetic growth defect | FSW = 0.0389
| Class C:mitochondrion | UPL1 (UBIQUITIN-PROTEIN LIGASE 1) UBIQUITIN-PROTEIN LIGASE |
AT3G22110 | PredictedPhenotypic Enhancement | FSW = 0.0110
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G62870 | PredictedAffinity Capture-MS | FSW = 0.0230
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0041
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G04750 | PredictedPhenotypic EnhancementSynthetic LethalitySynthetic LethalitySynthetic Lethalityinterologs mappingsynthetic growth defect | FSW = 0.0909
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT4G04340 | Predictedtwo hybridtwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternPhenotypic Enhancementtwo hybridinterologs mapping | FSW = 0.1857
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT3G43810 | PredictedReconstituted Complexinteraction prediction | FSW = 0.0062
| Unknown | CAM7 (CALMODULIN 7) CALCIUM ION BINDING |
AT1G66410 | PredictedReconstituted Complex | FSW = 0.0040
| Unknown | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
AT4G14350 | PredictedSynthetic Rescuesynthetic growth defectPhenotypic Enhancement | FSW = 0.1528
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G49370 | PredictedPhenotypic Enhancement | FSW = 0.1931
| Unknown | CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE |
AT3G21700 | Predictedtwo hybrid | FSW = 0.0175
| Unknown | SGP2 GTP BINDING |
AT5G54840 | Predictedinteraction prediction | FSW = 0.0123
| Unknown | SGP1 GTP BINDING |
AT4G35370 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0978
| Unknown | NUCLEOTIDE BINDING |
AT2G36170 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.1564
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT3G06720 | Predictedtwo hybridinteraction prediction | FSW = 0.0158
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT1G21700 | Predictedsynthetic growth defectPhenotypic Enhancementsynthetic growth defectPhenotypic Enhancementsynthetic growth defect | FSW = 0.1532
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT4G39200 | PredictedPhenotypic Enhancement | FSW = 0.0268
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT2G05170 | PredictedSynthetic Lethality | FSW = 0.0712
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT1G05180 | PredictedPhenotypic Enhancement | FSW = 0.2104
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT1G31300 | PredictedPhenotypic Enhancement | FSW = 0.0559
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G196452) HAS 478 BLAST HITS TO 478 PROTEINS IN 104 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 269 FUNGI - 98 PLANTS - 80 VIRUSES - 0 OTHER EUKARYOTES - 31 (SOURCE NCBI BLINK) |
AT1G55300 | PredictedPhenotypic Enhancement | FSW = 0.0210
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G75380 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.2225
| Unknown | WOUND-RESPONSIVE PROTEIN-RELATED |
AT2G27340 | PredictedPhenotypic Enhancement | FSW = 0.0365
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK) |
AT4G00980 | PredictedPhenotypic Enhancement | FSW = 0.0099
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT4G21490 | Predictedinterologs mappinginterologs mappingPhenotypic Enhancementinterologs mapping | FSW = 0.1417
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G29580 | PredictedSynthetic Lethality | FSW = 0.0903
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT5G01770 | PredictedPhenotypic Enhancementinterologs mapping | FSW = 0.1954
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G16980 | Predictedinterologs mappinginterologs mappingPhenotypic EnhancementPhenotypic Enhancementinterologs mappingPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancementinterologs mapping | FSW = 0.1536
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G38820 | PredictedPhenotypic Enhancement | FSW = 0.2092
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT3G43980 | PredictedSynthetic Rescue | FSW = 0.1088
| Unknown | 40S RIBOSOMAL PROTEIN S29 (RPS29A) |
AT3G47610 | Predictedinterologs mappingSynthetic Lethalityinterologs mapping | FSW = 0.1113
| Unknown | TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT1G02690 | Predictedtwo hybrid | FSW = 0.0171
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454