Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G54800 - ( GPT1 antiporter/ glucose-6-phosphate transmembrane transporter )
20 Proteins interacs with AT5G54800Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G07680 | PredictedAffinity Capture-MS | FSW = 0.1026
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G62870 | PredictedAffinity Capture-MSsynthetic growth defect | FSW = 0.0264
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G20390 | Predictedtwo hybrid | FSW = 0.0200
| Unknown | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
AT2G45960 | PredictedAffinity Capture-MS | FSW = 0.0268
| Unknown | PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B) WATER CHANNEL |
AT1G80190 | PredictedAffinity Capture-MS | FSW = 0.0916
| Unknown | PSF1 (PARTNER OF SLD FIVE 1) |
AT1G77210 | PredictedSynthetic Rescue | FSW = 0.0631
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0455
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT4G31720 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.0267
| Unknown | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
AT2G29540 | PredictedSynthetic Rescue | FSW = 0.0187
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0218
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G07340 | Predictedinterologs mapping | FSW = 0.1296
| Unknown | ATSTP2 (SUGAR TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G10280 | Predictedinterologs mappinginterologs mapping | FSW = 0.1569
| Unknown | UNKNOWN PROTEIN |
AT2G35390 | Predictedinterologs mapping | FSW = 0.0412
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT3G13060 | PredictedAffinity Capture-MS | FSW = 0.0826
| Unknown | ECT5 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S YT521-B-LIKE PROTEIN (INTERPROIPR007275) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS ECT2 PROTEIN BINDING (TAIRAT3G134601) HAS 1007 BLAST HITS TO 965 PROTEINS IN 147 SPECIES ARCHAE - 0 BACTERIA - 8 METAZOA - 528 FUNGI - 103 PLANTS - 235 VIRUSES - 0 OTHER EUKARYOTES - 133 (SOURCE NCBI BLINK) |
AT3G62770 | PredictedAffinity Capture-MS | FSW = 0.0407
| Unknown | ATATG18A |
AT4G17380 | Predictedinterologs mapping | FSW = 0.0457
| Unknown | MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
AT4G29640 | Predictedinterologs mapping | FSW = 0.0985
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT5G02560 | PredictedSynthetic RescueAffinity Capture-MS | FSW = 0.0333
| Unknown | HTA12 DNA BINDING |
AT5G39400 | PredictedSynthetic Rescue | FSW = 0.1481
| Unknown | PTEN1 PHOSPHATASE |
AT1G34580 | PredictedAffinity Capture-Western | FSW = 0.0280
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454