Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G54800 - ( GPT1 antiporter/ glucose-6-phosphate transmembrane transporter )

20 Proteins interacs with AT5G54800
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G07680

Predicted

Affinity Capture-MS

FSW = 0.1026

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT3G62870

Predicted

Affinity Capture-MS

synthetic growth defect

FSW = 0.0264

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT3G20390

Predicted

two hybrid

FSW = 0.0200

Unknown

ENDORIBONUCLEASE L-PSP FAMILY PROTEIN
AT2G45960

Predicted

Affinity Capture-MS

FSW = 0.0268

Unknown

PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B) WATER CHANNEL
AT1G80190

Predicted

Affinity Capture-MS

FSW = 0.0916

Unknown

PSF1 (PARTNER OF SLD FIVE 1)
AT1G77210

Predicted

Synthetic Rescue

FSW = 0.0631

Unknown

SUGAR TRANSPORTER PUTATIVE
AT4G34430

Predicted

Affinity Capture-MS

FSW = 0.0455

Unknown

CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT4G31720

Predicted

interologs mapping

Synthetic Lethality

FSW = 0.0267

Unknown

TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR
AT2G29540

Predicted

Synthetic Rescue

FSW = 0.0187

Unknown

ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT4G17190

Predicted

Affinity Capture-MS

FSW = 0.0218

Unknown

FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT1G07340

Predicted

interologs mapping

FSW = 0.1296

Unknown

ATSTP2 (SUGAR TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT1G10280

Predicted

interologs mapping

interologs mapping

FSW = 0.1569

Unknown

UNKNOWN PROTEIN
AT2G35390

Predicted

interologs mapping

FSW = 0.0412

Unknown

RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI)
AT3G13060

Predicted

Affinity Capture-MS

FSW = 0.0826

Unknown

ECT5 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S YT521-B-LIKE PROTEIN (INTERPROIPR007275) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS ECT2 PROTEIN BINDING (TAIRAT3G134601) HAS 1007 BLAST HITS TO 965 PROTEINS IN 147 SPECIES ARCHAE - 0 BACTERIA - 8 METAZOA - 528 FUNGI - 103 PLANTS - 235 VIRUSES - 0 OTHER EUKARYOTES - 133 (SOURCE NCBI BLINK)
AT3G62770

Predicted

Affinity Capture-MS

FSW = 0.0407

Unknown

ATATG18A
AT4G17380

Predicted

interologs mapping

FSW = 0.0457

Unknown

MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING
AT4G29640

Predicted

interologs mapping

FSW = 0.0985

Unknown

CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE
AT5G02560

Predicted

Synthetic Rescue

Affinity Capture-MS

FSW = 0.0333

Unknown

HTA12 DNA BINDING
AT5G39400

Predicted

Synthetic Rescue

FSW = 0.1481

Unknown

PTEN1 PHOSPHATASE
AT1G34580

Predicted

Affinity Capture-Western

FSW = 0.0280

Unknown

MONOSACCHARIDE TRANSPORTER PUTATIVE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454