Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G54910 - ( DEAD/DEAH box helicase putative )
60 Proteins interacs with AT5G54910| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G09630
   | PredictedAffinity Capture-MS | FSW = 0.0689
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
| AT3G09200
| PredictedAffinity Capture-MS | FSW = 0.0854
| Class C:nucleus | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B) |
| AT2G47610
| PredictedAffinity Capture-MS | FSW = 0.1107
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
| AT1G56070
| PredictedAffinity Capture-MS | FSW = 0.0139
| Class C:nucleus | LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
| AT3G49010
| PredictedAffinity Capture-MS | FSW = 0.1219
| Class C:nucleus | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G60390
| PredictedAffinity Capture-MS | FSW = 0.0091
| Class C:nucleus | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
| AT3G11964 | PredictedAffinity Capture-MSCo-expression | FSW = 0.2169
| Class C:nucleus | RNA BINDING |
| AT4G16830
| PredictedAffinity Capture-MS | FSW = 0.0192
| Class C:nucleus | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
| AT1G74060
| PredictedAffinity Capture-MS | FSW = 0.1205
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
| AT4G25630
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1247
| Class C:nucleus | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
| AT1G72440
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0977
| Class C:nucleus | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
| AT3G23620
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0663
| Class C:nucleus | BRIX DOMAIN-CONTAINING PROTEIN |
| AT3G57150
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2442
| Class C:nucleus | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
| AT3G56990
| PredictedAffinity Capture-MS | FSW = 0.0807
| Class C:nucleus | EDA7 (EMBRYO SAC DEVELOPMENT ARREST 7) |
| AT5G37720
| PredictedAffinity Capture-MS | FSW = 0.0533
| Class C:nucleus | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
| AT3G05060
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1660
| Class C:nucleus | SAR DNA-BINDING PROTEIN PUTATIVE |
| AT1G17980
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2234
| Class C:nucleus | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
| AT3G12860
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1161
| Class C:nucleus | NUCLEOLAR PROTEIN NOP56 PUTATIVE |
| AT1G56110
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0530
| Class C:nucleus | NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56) |
| AT2G37990
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0971
| Class C:nucleus | RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN |
| AT4G08350
| PredictedAffinity Capture-MS | FSW = 0.0653
| Class C:nucleus | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
| AT2G34210
| PredictedAffinity Capture-MS | FSW = 0.0744
| Class C:nucleus | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
| AT3G18600
| PredictedAffinity Capture-MSAffinity Capture-MSEnriched domain pairCo-expression | FSW = 0.0663
| Class C:nucleus | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT5G58420
| PredictedAffinity Capture-MS | FSW = 0.1499
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S4 (RPS4D) |
| AT2G17360
| PredictedAffinity Capture-MS | FSW = 0.0892
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
| AT1G18540
| PredictedAffinity Capture-MS | FSW = 0.0395
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
| AT5G09650
| PredictedAffinity Capture-MS | FSW = 0.0246
| Unknown | ATPPA6 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 6) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
| AT1G54080
| Predictedinteraction prediction | FSW = 0.0161
| Unknown | OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE |
| AT1G10490
| PredictedAffinity Capture-MSCo-expression | FSW = 0.1390
| Unknown | UNKNOWN PROTEIN |
| AT5G23880
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1528
| Unknown | CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) DNA BINDING / PROTEIN BINDING |
| AT3G12280
| PredictedPhenotypic Enhancement | FSW = 0.0098
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
| AT1G08880
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0269
| Unknown | H2AXA DNA BINDING |
| AT1G17760
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1850
| Unknown | CSTF77 PROTEIN BINDING |
| AT1G49760
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0896
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
| AT1G61010
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1245
| Unknown | CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) PROTEIN BINDING |
| AT2G39840
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0628
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT5G13480
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1287
| Unknown | FY PROTEIN BINDING |
| AT5G14530
| PredictedAffinity Capture-MS | FSW = 0.1941
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT5G46840
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1692
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT1G15440
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0923
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT2G20980
| Predictedsynthetic growth defect | FSW = 0.0379
| Unknown | MCM10 |
| AT2G37840
| Predictedbiochemical | FSW = 0.0194
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT3G01090
| Predictedbiochemical | FSW = 0.0178
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
| AT3G01160
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2565
| Unknown | UNKNOWN PROTEIN |
| AT3G14100
| PredictedAffinity Capture-MS | FSW = 0.0246
| Unknown | OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE |
| AT3G56510
| PredictedAffinity Capture-MS | FSW = 0.1974
| Unknown | TBP-BINDING PROTEIN PUTATIVE |
| AT5G22110
| PredictedAffinity Capture-MS | FSW = 0.0908
| Unknown | ATDPB2 (ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING |
| AT5G22840
| Predictedbiochemical | FSW = 0.0087
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT5G61330
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1222
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
| AT5G65900
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionEnriched domain pairCo-expression | FSW = 0.2011
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT5G66100
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0379
| Unknown | LA DOMAIN-CONTAINING PROTEIN |
| AT5G02530
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0636
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
| AT1G22760
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0908
| Unknown | PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR |
| AT4G35890
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0428
| Unknown | LA DOMAIN-CONTAINING PROTEIN |
| AT2G40010
| PredictedAffinity Capture-MS | FSW = 0.0571
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A) |
| AT2G29400
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0840
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT1G73840
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1780
| Unknown | ESP1 (ENHANCED SILENCING PHENOTYPE 1) |
| AT3G48960
| PredictedAffinity Capture-MS | FSW = 0.0551
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13C) |
| AT1G17370
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0098
| Unknown | UBP1B (OLIGOURIDYLATE BINDING PROTEIN 1B) MRNA 3-UTR BINDING |
| AT2G07690
| PredictedSynthetic RescueSynthetic RescueCo-expression | FSW = 0.0125
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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