Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G54940 - ( eukaryotic translation initiation factor SUI1 putative )
65 Proteins interacs with AT5G54940| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G12650
   | PredictedPhenotypic Enhancement | FSW = 0.0587
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE GOLGI APPARATUS PLASMA MEMBRANE VACUOLE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NONASPANIN (TM9SF) (INTERPROIPR004240) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G351601) HAS 983 BLAST HITS TO 980 PROTEINS IN 161 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 434 FUNGI - 144 PLANTS - 228 VIRUSES - 0 OTHER EUKARYOTES - 177 (SOURCE NCBI BLINK) |
| AT5G10350
| PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0968
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
| AT5G50240
| PredictedAffinity Capture-MS | FSW = 0.0471
| Unknown | PIMT2 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2) PROTEIN-L-ISOASPARTATE (D-ASPARTATE) O-METHYLTRANSFERASE |
| AT5G65430
| PredictedPhenotypic Enhancement | FSW = 0.0695
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT1G55920
| PredictedPhenotypic Enhancement | FSW = 0.0492
| Unknown | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
| AT3G55400
| PredictedPhenotypic Enhancement | FSW = 0.0444
| Unknown | OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
| AT1G22170
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0769
| Unknown | PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN |
| AT5G15450
| PredictedPhenotypic Enhancement | FSW = 0.0531
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT4G32520
| PredictedAffinity Capture-MS | FSW = 0.0168
| Unknown | SHM3 (SERINE HYDROXYMETHYLTRANSFERASE 3) CATALYTIC/ GLYCINE HYDROXYMETHYLTRANSFERASE/ PYRIDOXAL PHOSPHATE BINDING |
| AT5G23740
| PredictedAffinity Capture-MS | FSW = 0.0061
| Unknown | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G12310
| PredictedAffinity Capture-MS | FSW = 0.0048
| Unknown | CALMODULIN PUTATIVE |
| AT1G04750
| PredictedPhenotypic Enhancement | FSW = 0.0794
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
| AT2G32670
| PredictedPhenotypic Enhancement | FSW = 0.1591
| Unknown | ATVAMP725 |
| AT5G26340
| PredictedPhenotypic Enhancement | FSW = 0.0473
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
| AT5G25754 | PredictedAffinity Capture-MS | FSW = 0.0556
| Unknown | UNKNOWN PROTEIN |
| AT4G25740
| PredictedAffinity Capture-MS | FSW = 0.0790
| Unknown | 40S RIBOSOMAL PROTEIN S10 (RPS10A) |
| AT4G11420
| PredictedAffinity Capture-MS | FSW = 0.1019
| Unknown | EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR |
| AT3G57290
| PredictedAffinity Capture-MS | FSW = 0.0866
| Unknown | EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E) TRANSLATION INITIATION FACTOR |
| AT2G39990
| PredictedAffinity Capture-MS | FSW = 0.0829
| Unknown | EIF2 TRANSLATION INITIATION FACTOR |
| AT1G21700
| PredictedPhenotypic Enhancement | FSW = 0.0144
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
| AT3G13445
| PredictedPhenotypic Enhancement | FSW = 0.0475
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
| AT4G09800 | PredictedPhenotypic Suppression | FSW = 0.0339
| Unknown | RPS18C (S18 RIBOSOMAL PROTEIN) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G30160
| PredictedPhenotypic Enhancement | FSW = 0.1105
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
| AT5G47720
| PredictedAffinity Capture-MS | FSW = 0.0373
| Unknown | ACETYL-COA C-ACYLTRANSFERASE PUTATIVE / 3-KETOACYL-COA THIOLASE PUTATIVE |
| AT3G60360
| Predictedsynthetic growth defect | FSW = 0.2044
| Unknown | EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) |
| AT4G39200
| PredictedPhenotypic Enhancement | FSW = 0.1267
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
| AT4G27070
| PredictedPhenotypic Enhancement | FSW = 0.0323
| Unknown | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE |
| AT4G16420
| PredictedPhenotypic Enhancement | FSW = 0.0776
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
| AT3G22860
| Predictedtwo hybrid | FSW = 0.0815
| Unknown | TIF3C2 TRANSLATION INITIATION FACTOR |
| AT1G10840
| PredictedAffinity Capture-MS | FSW = 0.0909
| Unknown | TIF3H1 TRANSLATION INITIATION FACTOR |
| AT1G13180
| PredictedAffinity Capture-MS | FSW = 0.0056
| Unknown | DIS1 (DISTORTED TRICHOMES 1) ATP BINDING / ACTIN BINDING / PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
| AT1G42440
| PredictedAffinity Capture-MS | FSW = 0.0040
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK) |
| AT1G71750
| PredictedAffinity Capture-MS | FSW = 0.0235
| Unknown | PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN |
| AT2G33840
| PredictedAffinity Capture-MS | FSW = 0.0214
| Unknown | TRNA SYNTHETASE CLASS I (W AND Y) FAMILY PROTEIN |
| AT2G39260
| Predictedtwo hybridin vitro | FSW = 0.0261
| Unknown | RNA BINDING / BINDING / PROTEIN BINDING |
| AT2G46280
| PredictedAffinity Capture-MS | FSW = 0.0363
| Unknown | TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT4G18330
| PredictedAffinity Capture-MS | FSW = 0.0214
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 PUTATIVE / EIF2S3 PUTATIVE / EIF-2-GAMMA PUTATIVE |
| AT4G33250
| PredictedAffinity Capture-MS | FSW = 0.1220
| Unknown | EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K) TRANSLATION INITIATION FACTOR |
| AT5G05470
| PredictedAffinity Capture-MS | FSW = 0.0235
| Unknown | EIF2 ALPHA RNA BINDING / TRANSLATION INITIATION FACTOR |
| AT5G06000
| PredictedAffinity Capture-MS | FSW = 0.1279
| Unknown | EIF3G2 RNA BINDING / TRANSLATION INITIATION FACTOR |
| AT5G10810
| PredictedAffinity Capture-MS | FSW = 0.0131
| Unknown | ATER |
| AT5G15610
| PredictedAffinity Capture-MS | FSW = 0.0571
| Unknown | PROTEASOME FAMILY PROTEIN |
| AT5G44320
| PredictedAffinity Capture-MS | FSW = 0.0671
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 PUTATIVE / EIF-3 ZETA PUTATIVE / EIF3D PUTATIVE |
| AT5G59140
| PredictedAffinity Capture-MS | FSW = 0.0087
| Unknown | SKP1 FAMILY PROTEIN |
| AT5G67540
| PredictedAffinity Capture-MS | FSW = 0.0608
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
| AT1G13580
| PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.1869
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
| AT1G26690
| PredictedPhenotypic Enhancement | FSW = 0.0662
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
| AT1G80710
| PredictedPhenotypic Suppression | FSW = 0.0277
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT2G37420
| PredictedPhenotypic Suppression | FSW = 0.1105
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
| AT2G42005
| PredictedPhenotypic Enhancement | FSW = 0.0261
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
| AT3G09640
| PredictedAffinity Capture-MS | FSW = 0.1403
| Unknown | APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE |
| AT3G11290
| PredictedPhenotypic Enhancement | FSW = 0.0500
| Unknown | UNKNOWN PROTEIN |
| AT3G12200
| PredictedPhenotypic Enhancement | FSW = 0.0795
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT3G13210
| PredictedPhenotypic Enhancement | FSW = 0.1719
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
| AT4G19645
| PredictedPhenotypic Suppression | FSW = 0.0384
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
| AT5G14060
| PredictedPhenotypic Enhancement | FSW = 0.1254
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
| AT5G14180
| PredictedSynthetic LethalityAffinity Capture-MS | FSW = 0.1723
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
| AT5G15240
| PredictedPhenotypic Enhancement | FSW = 0.0610
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
| AT5G26250
| PredictedPhenotypic Enhancement | FSW = 0.0422
| Unknown | SUGAR TRANSPORTER PUTATIVE |
| AT5G41700
| PredictedPhenotypic Enhancement | FSW = 0.0298
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT5G44830
| PredictedPhenotypic Enhancement | FSW = 0.0824
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
| AT4G04700
| PredictedSynthetic Rescue | FSW = 0.0591
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT5G54760
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.0489
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
| AT1G54290
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.0460
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
| AT4G27130
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.0941
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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