Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G55130 - ( CNX5 (CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 5) Mo-molybdopterin cofactor sulfurase )
35 Proteins interacs with AT5G55130Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G37910 | Predictedpull down | FSW = 0.0033
| Unknown | MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING |
AT3G54440 | Predictedpull down | FSW = 0.0175
| Unknown | GLYCOSIDE HYDROLASE FAMILY 2 PROTEIN |
AT5G64740 | Predictedtwo hybrid | FSW = 0.0156
| Unknown | CESA6 (CELLULOSE SYNTHASE 6) CELLULOSE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT1G20090 | PredictedSynthetic Lethality | FSW = 0.0235
| Unknown | ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING |
AT4G35020 | PredictedSynthetic Lethality | FSW = 0.0203
| Unknown | ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE |
AT5G67270 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0595
| Unknown | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT2G24490 | Predictedtwo hybridCo-expression | FSW = 0.0044
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT3G02920 | Predictedtwo hybrid | FSW = 0.0288
| Unknown | REPLICATION PROTEIN-RELATED |
AT2G18510 | Predictedtwo hybridtwo hybrid | FSW = 0.0081
| Unknown | EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G21700 | Predictedtwo hybrid | FSW = 0.0205
| Unknown | SGP2 GTP BINDING |
AT5G22220 | Predictedtwo hybrid | FSW = 0.0165
| Unknown | E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT5G54840 | Predictedinteraction prediction | FSW = 0.0218
| Unknown | SGP1 GTP BINDING |
AT4G18040 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0174
| Unknown | EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT5G40650 | Predictedtwo hybrid | FSW = 0.0889
| Unknown | SDH2-2 ELECTRON CARRIER/ SUCCINATE DEHYDROGENASE |
AT3G27380 | Predictedtwo hybrid | FSW = 0.1143
| Unknown | SDH2-1 ELECTRON CARRIER/ SUCCINATE DEHYDROGENASE |
AT5G65165 | Predictedtwo hybrid | FSW = 0.0880
| Unknown | SDH2-3 ELECTRON CARRIER/ SUCCINATE DEHYDROGENASE |
AT5G26710 | PredictedAffinity Capture-MS | FSW = 0.0320
| Unknown | GLUTAMATE-TRNA LIGASE PUTATIVE / GLUTAMYL-TRNA SYNTHETASE PUTATUVE / GLURS PUTATIVE |
AT3G47690 | PredictedSynthetic Lethality | FSW = 0.0774
| Unknown | ATEB1A MICROTUBULE BINDING |
AT1G16570 | Predictedtwo hybridtwo hybrid | FSW = 0.0140
| Unknown | GLYCOSYL TRANSFERASE FAMILY 1 PROTEIN |
AT3G24200 | Predictedtwo hybridtwo hybrid | FSW = 0.0468
| Unknown | FAD BINDING / MONOOXYGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON PAIRED DONORS WITH INCORPORATION OR REDUCTION OF MOLECULAR OXYGEN NADH OR NADPH AS ONE DONOR AND INCORPORATION OF ONE ATOM OF OXYGEN |
AT5G49310 | Predictedtwo hybrid | FSW = 0.0090
| Unknown | IMPA-5 (IMPORTIN ALPHA ISOFORM 5) BINDING / PROTEIN TRANSPORTER |
AT2G18290 | Predictedtwo hybridtwo hybrid | FSW = 0.0410
| Unknown | ANAPHASE-PROMOTING COMPLEX SUBUNIT 10 FAMILY / APC10 FAMILY |
AT2G43760 | Predictedtwo hybridtwo hybridin vivo | FSW = 0.0526
| Unknown | MOLYBDOPTERIN BIOSYNTHESIS MOAE FAMILY PROTEIN |
AT4G27490 | Predictedtwo hybrid | FSW = 0.0263
| Unknown | 3 EXORIBONUCLEASE FAMILY DOMAIN 1-CONTAINING PROTEIN |
AT2G45695 | Predictedtwo hybridbiochemicaltwo hybrid | FSW = 0.2449
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S UBIQUITIN RELATED MODIFIER 1 (INTERPROIPR015221) UBIQUITIN-RELATED MODIFIER 1 (INTERPROIPR017188) MOLYBDOPTERIN SYNTHASE/THIAMIN BIOSYNTHESIS SULPHUR CARRIER BETA-GRASP (INTERPROIPR016155) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT3G611131) HAS 238 BLAST HITS TO 238 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 93 FUNGI - 72 PLANTS - 18 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK) |
AT1G04160 | PredictedSynthetic Lethality | FSW = 0.0132
| Unknown | XIB (MYOSIN XI B) MOTOR |
AT1G08780 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0413
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G29990 | PredictedSynthetic Lethalityinteraction predictionCo-expression | FSW = 0.0436
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT3G22480 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0378
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT5G23290 | PredictedSynthetic Lethalityinteraction predictionCo-expression | FSW = 0.0503
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G49510 | PredictedSynthetic Lethalityinteraction predictionGene neighbors methodCo-expression | FSW = 0.0500
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT1G75660 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.0150
| Unknown | XRN3 5-3 EXORIBONUCLEASE |
AT4G29020 | Predictedtwo hybrid | FSW = 0.0696
| Unknown | GLYCINE-RICH PROTEIN |
AT4G05320 | PredictedEnriched domain pairGene fusion methodCo-expression | FSW = 0.0277
| Unknown | UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING |
AT1G12970 | PredictedGene fusion method | FSW = 0.0566
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454