Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G55220 - ( trigger factor type chaperone family protein )

28 Proteins interacs with AT5G55220
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G33210

Predicted

comigration in non denaturing gel electrophoresis

FSW = 0.0451

Class C:

plastid

 HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING
AT5G20720

Predicted

pull down

FSW = 0.1730

Class C:

plastid

 CPN20 (CHAPERONIN 20) CALMODULIN BINDING
AT2G33800

Predicted

pull down

FSW = 0.1788

Class C:

plastid

 RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT5G23140

Predicted

pull down

FSW = 0.2093

Class C:

plastid

 NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7) SERINE-TYPE ENDOPEPTIDASE
AT5G11880

Predicted

pull down

FSW = 0.0573

Class C:

plastid

 DIAMINOPIMELATE DECARBOXYLASE PUTATIVE / DAP CARBOXYLASE PUTATIVE
AT5G30510

Predicted

pull down

FSW = 0.1647

Class C:

plastid

 RPS1 (RIBOSOMAL PROTEIN S1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G42270

Predicted

pull down

FSW = 0.0693

Class C:

plastid

 VAR1 (VARIEGATED 1) ATP-DEPENDENT PEPTIDASE/ ATPASE/ METALLOPEPTIDASE
AT4G01900

Predicted

pull down

FSW = 0.1279

Class C:

plastid

 GLB1 (GLNB1 HOMOLOG) ACETYLGLUTAMATE KINASE REGULATOR
AT1G05190

Predicted

pull down

FSW = 0.0473

Class C:

plastid

 EMB2394 (EMBRYO DEFECTIVE 2394) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G33450

Predicted

pull down

FSW = 0.0554

Class C:

plastid

 50S RIBOSOMAL PROTEIN L28 CHLOROPLAST (CL28)
AT2G43030

Predicted

pull down

FSW = 0.0556

Class C:

plastid

 RIBOSOMAL PROTEIN L3 FAMILY PROTEIN
AT3G54440

Predicted

pull down

FSW = 0.0215

Class C:

plastid

 GLYCOSIDE HYDROLASE FAMILY 2 PROTEIN
ATCG00160Predicted

pull down

FSW = 0.1623

Class C:

plastid

 CHLOROPLAST RIBOSOMAL PROTEIN S2
ATCG00180Predicted

pull down

FSW = 0.3117

Class C:

plastid

 RNA POLYMERASE BETA SUBUNIT-1
ATCG00190Predicted

pull down

FSW = 0.1705

Class C:

plastid

 CHLOROPLAST DNA-DEPENDENT RNA POLYMERASE B SUBUNIT THE TRANSCRIPTION OF THIS GENE IS REGULATED BY A NUCLEAR ENCODED RNA POLYMERASE THIS GENE HAS BEEN TRANSFERRED TO MITOCHONDRIAL GENOME DURING CRUCIFER EVOLUTION
ATCG00380Predicted

pull down

FSW = 0.1093

Class C:

plastid

 CHLOROPLAST ENCODED RIBOSOMAL PROTEIN S4
ATCG00780Predicted

pull down

FSW = 0.0924

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L14 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG00800Predicted

pull down

FSW = 0.1254

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN S3 A CONSTITUENT OF THE SMALL SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG01240Predicted

pull down

FSW = 0.1672

Class C:

plastid

 30S CHLOROPLAST RIBOSOMAL PROTEIN S7
AT5G63400

Predicted

pull down

FSW = 0.0329

Unknown

 ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR
AT1G79530

Predicted

pull down

FSW = 0.0570

Unknown

 GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT5G52640

Predicted

pull down

FSW = 0.0076

Unknown

 ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT5G40650

Predicted

pull down

FSW = 0.1077

Unknown

 SDH2-2 ELECTRON CARRIER/ SUCCINATE DEHYDROGENASE
AT5G66760

Predicted

pull down

FSW = 0.0894

Unknown

 SDH1-1 ATP BINDING / SUCCINATE DEHYDROGENASE
AT2G18230

Predicted

pull down

FSW = 0.1681

Unknown

 ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT1G03687

Predicted

pull down

FSW = 0.1290

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 11 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S DTW (INTERPROIPR005636) HAS 347 BLAST HITS TO 347 PROTEINS IN 176 SPECIES ARCHAE - 0 BACTERIA - 320 METAZOA - 0 FUNGI - 0 PLANTS - 10 VIRUSES - 0 OTHER EUKARYOTES - 17 (SOURCE NCBI BLINK)
AT2G20060

Predicted

pull down

FSW = 0.2199

Unknown

 RIBOSOMAL PROTEIN L4 FAMILY PROTEIN
AT3G49080

Predicted

pull down

FSW = 0.1064

Unknown

 RIBOSOMAL PROTEIN S9 FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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