Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G55260 - ( PPX2 (PROTEIN PHOSPHATASE X 2) protein serine/threonine phosphatase )
29 Proteins interacs with AT5G55260Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G18140 | PredictedGene fusion method | FSW = 0.0438
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G02890 | PredictedGene fusion method | FSW = 0.0724
| Unknown | UBQ14 PROTEIN BINDING |
AT3G58500 | PredictedAffinity Capture-MSPhylogenetic profile method | FSW = 0.3208
| Unknown | PP2A-3 (PROTEIN PHOSPHATASE 2A-3) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G19980 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0610
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G25800 | PredictedAffinity Capture-MS | FSW = 0.0314
| Unknown | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT2G42500 | PredictedAffinity Capture-MSPhylogenetic profile method | FSW = 0.2828
| Unknown | PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G10430 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1429
| Unknown | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G59830 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4144
| Unknown | PP2A-1 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G26720 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.2703
| Unknown | PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G64040 | PredictedPhylogenetic profile method | FSW = 0.3612
| Unknown | TOPP3 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G02570 | Predictedtwo hybrid | FSW = 0.0196
| Unknown | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING |
AT1G69960 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3571
| Unknown | PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G53000 | Predictedtwo hybridtwo hybrid | FSW = 0.3571
| Unknown | TAP46 (2A PHOSPHATASE ASSOCIATED PROTEIN OF 46 KD) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0137
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT4G24740 | Predictedtwo hybrid | FSW = 0.0840
| Unknown | AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2) KINASE/ PROTEIN KINASE |
AT4G32660 | Predictedtwo hybrid | FSW = 0.1111
| Unknown | AME3 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G35750 | Predictedtwo hybrid | FSW = 0.0455
| Unknown | RHO-GTPASE-ACTIVATING PROTEIN-RELATED |
AT5G47240 | Predictedtwo hybridtwo hybrid | FSW = 0.0538
| Unknown | ATNUDT8 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 8) HYDROLASE |
AT5G47650 | Predictedtwo hybrid | FSW = 0.0523
| Unknown | ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2) ADP-RIBOSE DIPHOSPHATASE/ NAD OR NADH BINDING / HYDROLASE |
AT5G61530 | Predictedtwo hybrid | FSW = 0.0455
| Unknown | SMALL G PROTEIN FAMILY PROTEIN / RHOGAP FAMILY PROTEIN |
AT3G06670 | PredictedAffinity Capture-MS | FSW = 0.0295
| Unknown | BINDING |
AT5G42220 | PredictedAffinity Capture-MS | FSW = 0.0357
| Unknown | UBIQUITIN FAMILY PROTEIN |
AT5G49370 | PredictedAffinity Capture-MS | FSW = 0.1818
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS BINDING (TAIRAT3G066701) HAS 302 BLAST HITS TO 302 PROTEINS IN 94 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 191 FUNGI - 68 PLANTS - 33 VIRUSES - 0 OTHER EUKARYOTES - 10 (SOURCE NCBI BLINK) |
AT5G17070 | Predictedin vivoin vitroin vitroin vivo | FSW = 0.1250
| Unknown | UNKNOWN PROTEIN |
AT1G50370 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1408
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
AT5G27840 | PredictedPhylogenetic profile method | FSW = 0.3323
| Unknown | TOPP8 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G29400 | PredictedPhylogenetic profile method | FSW = 0.0875
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G05580 | PredictedPhylogenetic profile method | FSW = 0.3612
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
AT5G59160 | PredictedPhylogenetic profile method | FSW = 0.2286
| Unknown | TOPP2 PROTEIN SERINE/THREONINE PHOSPHATASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454