Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT5G55280 - ( FTSZ1-1 protein binding / structural molecule )
25 Proteins interacs with AT5G55280Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G36250 | Experimentalfluorescence acceptor donor pairprotein complementation assaytwo hybridprotein complementation assayfluorescence acceptor donor pair | FSW = 0.1773
| Class A:plastidClass D:plastid (p = 0.78)cytosol (p = 0.67) | FTSZ2-1 PROTEIN BINDING / STRUCTURAL MOLECULE |
AT5G42480 | Experimentaltwo hybrid | FSW = 0.0627
| Class A:plastidClass D:plastid (p = 0.78)cytosol (p = 0.67) | ARC6 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6) PROTEIN BINDING |
AT3G18165 | Experimental | FSW = 0.0388
| Class B:unclearplastidnucleusClass D:cytosol (p = 0.67) | MOS4 (MODIFIER OF SNC14) |
AT1G04510 | Experimental | FSW = 0.0127
| Class B:plastidnucleusClass D:cytosol (p = 0.67) | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G23080 | Experimental | FSW = 0.0952
| Unknown | TGH (TOUGH) RNA BINDING / PROTEIN BINDING |
AT1G09020 | Experimental | FSW = 0.0088
| Unknown | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR |
AT5G02200 | Experimental | FSW = 0.0714
| Unknown | FHL (FAR-RED-ELONGATED HYPOCOTYL1-LIKE) PROTEIN BINDING |
AT5G08670 | Predictedpull down | FSW = 0.1098
| Class C:plastid | ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM |
AT2G33800 | Predictedpull down | FSW = 0.0707
| Class C:plastid | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
AT1G62750 | Predictedpull down | FSW = 0.0889
| Class C:plastid | SCO1 (SNOWY COTYLEDON 1) ATP BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
AT3G10690 | Predictedpull down | FSW = 0.2689
| Class C:plastid | DNA GYRASE SUBUNIT A FAMILY PROTEIN |
AT4G01310 | Predictedpull down | FSW = 0.0310
| Class C:plastid | RIBOSOMAL PROTEIN L5 FAMILY PROTEIN |
AT5G60600 | Predictedpull down | FSW = 0.0290
| Class C:plastid | HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) 4 IRON 4 SULFUR CLUSTER BINDING / 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE |
AT1G79050 | Predictedpull down | FSW = 0.1898
| Class C:plastid | DNA REPAIR PROTEIN RECA |
AT3G13120 | Predictedpull down | FSW = 0.0282
| Class C:plastid | 30S RIBOSOMAL PROTEIN S10 CHLOROPLAST PUTATIVE |
AT1G03680 | Predictedtandem affinity purification | FSW = 0.1047
| Class C:plastid | ATHM1 ENZYME ACTIVATOR |
AT4G01800 | Predictedpull down | FSW = 0.1112
| Class C:plastid | PREPROTEIN TRANSLOCASE SECA SUBUNIT PUTATIVE |
ATCG00160 | Predictedpull down | FSW = 0.0633
| Class C:plastid | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
ATCG00380 | Predictedpull down | FSW = 0.0172
| Class C:plastid | CHLOROPLAST ENCODED RIBOSOMAL PROTEIN S4 |
ATCG00780 | Predictedpull down | FSW = 0.0301
| Class C:plastid | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L14 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX |
AT4G37910 | Predictedpull down | FSW = 0.0338
| Unknown | MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING |
AT5G55070 | Predictedpull down | FSW = 0.0301
| Unknown | 2-OXOACID DEHYDROGENASE FAMILY PROTEIN |
AT4G02930 | Predictedpull down | FSW = 0.0876
| Unknown | ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE |
AT1G01290 | Predictedpull down | FSW = 0.0408
| Unknown | CNX3 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3) CATALYTIC |
AT4G04880 | Predictedpull down | FSW = 0.1255
| Unknown | ADENOSINE/AMP DEAMINASE FAMILY PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454