Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G55280 - ( FTSZ1-1 protein binding / structural molecule )

25 Proteins interacs with AT5G55280
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G36250

Experimental

fluorescence acceptor donor pair

protein complementation assay

two hybrid

protein complementation assay

fluorescence acceptor donor pair

FSW = 0.1773

Class A:

plastid

Class D:

plastid (p = 0.78)

cytosol (p = 0.67)

FTSZ2-1 PROTEIN BINDING / STRUCTURAL MOLECULE
AT5G42480

Experimental

two hybrid

FSW = 0.0627

Class A:

plastid

Class D:

plastid (p = 0.78)

cytosol (p = 0.67)

ARC6 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6) PROTEIN BINDING
AT3G18165

Experimental

FSW = 0.0388

Class B:

unclear

plastid

nucleus

Class D:

cytosol (p = 0.67)

MOS4 (MODIFIER OF SNC14)
AT1G04510

Experimental

FSW = 0.0127

Class B:

plastid

nucleus

Class D:

cytosol (p = 0.67)

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G23080

Experimental

FSW = 0.0952

Unknown

TGH (TOUGH) RNA BINDING / PROTEIN BINDING
AT1G09020

Experimental

FSW = 0.0088

Unknown

SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR
AT5G02200

Experimental

FSW = 0.0714

Unknown

FHL (FAR-RED-ELONGATED HYPOCOTYL1-LIKE) PROTEIN BINDING
AT5G08670

Predicted

pull down

FSW = 0.1098

Class C:

plastid

ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM
AT2G33800

Predicted

pull down

FSW = 0.0707

Class C:

plastid

RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT1G62750

Predicted

pull down

FSW = 0.0889

Class C:

plastid

SCO1 (SNOWY COTYLEDON 1) ATP BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING
AT3G10690

Predicted

pull down

FSW = 0.2689

Class C:

plastid

DNA GYRASE SUBUNIT A FAMILY PROTEIN
AT4G01310

Predicted

pull down

FSW = 0.0310

Class C:

plastid

RIBOSOMAL PROTEIN L5 FAMILY PROTEIN
AT5G60600

Predicted

pull down

FSW = 0.0290

Class C:

plastid

HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) 4 IRON 4 SULFUR CLUSTER BINDING / 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE
AT1G79050

Predicted

pull down

FSW = 0.1898

Class C:

plastid

DNA REPAIR PROTEIN RECA
AT3G13120

Predicted

pull down

FSW = 0.0282

Class C:

plastid

30S RIBOSOMAL PROTEIN S10 CHLOROPLAST PUTATIVE
AT1G03680

Predicted

tandem affinity purification

FSW = 0.1047

Class C:

plastid

ATHM1 ENZYME ACTIVATOR
AT4G01800

Predicted

pull down

FSW = 0.1112

Class C:

plastid

PREPROTEIN TRANSLOCASE SECA SUBUNIT PUTATIVE
ATCG00160Predicted

pull down

FSW = 0.0633

Class C:

plastid

CHLOROPLAST RIBOSOMAL PROTEIN S2
ATCG00380Predicted

pull down

FSW = 0.0172

Class C:

plastid

CHLOROPLAST ENCODED RIBOSOMAL PROTEIN S4
ATCG00780Predicted

pull down

FSW = 0.0301

Class C:

plastid

ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L14 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
AT4G37910

Predicted

pull down

FSW = 0.0338

Unknown

MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING
AT5G55070

Predicted

pull down

FSW = 0.0301

Unknown

2-OXOACID DEHYDROGENASE FAMILY PROTEIN
AT4G02930

Predicted

pull down

FSW = 0.0876

Unknown

ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE
AT1G01290

Predicted

pull down

FSW = 0.0408

Unknown

CNX3 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3) CATALYTIC
AT4G04880

Predicted

pull down

FSW = 0.1255

Unknown

ADENOSINE/AMP DEAMINASE FAMILY PROTEIN

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Fasta sequences:

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454