Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G55930 - ( OPT1 (OLIGOPEPTIDE TRANSPORTER 1) oligopeptide transporter )

7 Proteins interacs with AT5G55930
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G27730

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.6001

Unknown

OPT6 (OLIGOPEPTIDE TRANSPORTER 1) OLIGOPEPTIDE TRANSPORTER
AT1G09930

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6644

Unknown

ATOPT2 OLIGOPEPTIDE TRANSPORTER
AT5G64410

Predicted

Shared biological function

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6001

Unknown

OPT4 (OLIGOPEPTIDE TRANSPORTER 4) OLIGOPEPTIDE TRANSPORTER
AT5G53510

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6001

Unknown

ATOPT9 (ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 9) OLIGOPEPTIDE TRANSPORTER
AT5G53520

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6001

Unknown

ATOPT8 (ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 8) OLIGOPEPTIDE TRANSPORTER
AT4G26590

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.7020

Unknown

OPT5 (OLIGOPEPTIDE TRANSPORTER 5) OLIGOPEPTIDE TRANSPORTER
AT4G10770

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.7442

Unknown

OPT7 (OLIGOPEPTIDE TRANSPORTER 7) OLIGOPEPTIDE TRANSPORTER

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454