Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G55990 - ( CBL2 (CALCINEURIN B-LIKE 2) calcium ion binding )

20 Proteins interacs with AT5G55990
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G01820

Experimental

two hybrid

pull down

Reconstituted Complex

two hybrid

protein complementation assay

two hybrid

FSW = 0.0853

Class A:

vacuole

Class D:

cytosol (p = 0.67)

ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G30270

Experimental

two hybrid

FSW = 0.0600

Class B:

vacuole

unclear

CIPK23 (CBL-INTERACTING PROTEIN KINASE 23) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE
AT1G02280

Experimental

competition binding

gtpase assay

FSW = 0.0464

Class B:

vacuole

plastid

Class D:

cytosol (p = 0.67)

TOC33 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 33) GTP BINDING / GTPASE/ PROTEIN BINDING
AT1G73590

Experimental

FSW = 0.0696

Class B:

vacuole

plasma membrane

endoplasmic reticulum

cytosol

Class D:

extracellular (p = 0.86)

PIN1 (PIN-FORMED 1) TRANSPORTER
AT1G02840

Experimental

two hybrid

Reconstituted Complex

in vitro

FSW = 0.0385

Class B:

vacuole

nucleus

SR1 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G29230

Experimental

two hybrid

FSW = 0.0600

Unknown

CIPK18 (CBL-INTERACTING PROTEIN KINASE 18) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G34180

Experimental

two hybrid

pull down

Reconstituted Complex

two hybrid

FSW = 0.0351

Unknown

CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G18700

Experimental

two hybrid

FSW = 0.1667

Unknown

CIPK12 (CBL-INTERACTING PROTEIN KINASE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G23000

Experimental

two hybrid

two hybrid

FSW = 0.1506

Unknown

CIPK7 (CBL-INTERACTING PROTEIN KINASE 7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G30960

Experimental

two hybrid

FSW = 0.0789

Unknown

SIP3 (SOS3-INTERACTING PROTEIN 3) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G25090

Experimental

FSW = 0.1364

Unknown

CIPK16 (CBL-INTERACTING PROTEIN KINASE 16) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G17510

Experimental

pull down

far western blotting

two hybrid

Reconstituted Complex

FSW = 0.1600

Unknown

CIPK1 (CBL-INTERACTING PROTEIN KINASE 1) KINASE/ PROTEIN BINDING
AT5G35410

Experimental

two hybrid

protein complementation assay

FSW = 0.0656

Unknown

SOS2 (SALT OVERLY SENSITIVE 2) KINASE/ PROTEIN KINASE
AT2G30360

Experimental

two hybrid

two hybrid

Affinity Capture-Western

affinity technology

FSW = 0.1219

Unknown

SIP4 (SOS3-INTERACTING PROTEIN 4) KINASE/ PROTEIN KINASE
AT5G07070

Experimental

FSW = 0.0652

Unknown

CIPK2 (CBL-INTERACTING PROTEIN KINASE 2) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G14580

Experimental

two hybrid

FSW = 0.2327

Unknown

CIPK4 (CBL-INTERACTING PROTEIN KINASE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G01140

Experimental

two hybrid

two hybrid

FSW = 0.1280

Unknown

CIPK9 (CBL-INTERACTING PROTEIN KINASE 9) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G04885

Experimental

FSW = 0.0205

Unknown

PCFS4 (PCF11P-SIMILAR PROTEIN 4) ZINC ION BINDING
AT4G26570

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.6914

Class C:

vacuole

ATCBL3 (ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3) CALCIUM ION BINDING
AT4G16350

Predicted

Gene fusion method

Co-expression

FSW = 0.3683

Unknown

CBL6 (CALCINEURIN B-LIKE PROTEIN 6) CALCIUM ION BINDING

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454