Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G55990 - ( CBL2 (CALCINEURIN B-LIKE 2) calcium ion binding )
20 Proteins interacs with AT5G55990Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G01820 | Experimentaltwo hybridpull downReconstituted Complextwo hybridprotein complementation assaytwo hybrid | FSW = 0.0853
| Class A:vacuoleClass D:cytosol (p = 0.67) | ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G30270 | Experimentaltwo hybrid | FSW = 0.0600
| Class B:vacuoleunclear | CIPK23 (CBL-INTERACTING PROTEIN KINASE 23) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT1G02280 | Experimentalcompetition bindinggtpase assay | FSW = 0.0464
| Class B:vacuoleplastidClass D:cytosol (p = 0.67) | TOC33 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 33) GTP BINDING / GTPASE/ PROTEIN BINDING |
AT1G73590 | Experimental | FSW = 0.0696
| Class B:vacuoleplasma membraneendoplasmic reticulumcytosolClass D:extracellular (p = 0.86) | PIN1 (PIN-FORMED 1) TRANSPORTER |
AT1G02840 | Experimentaltwo hybridReconstituted Complexin vitro | FSW = 0.0385
| Class B:vacuolenucleus | SR1 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G29230 | Experimentaltwo hybrid | FSW = 0.0600
| Unknown | CIPK18 (CBL-INTERACTING PROTEIN KINASE 18) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G34180 | Experimentaltwo hybridpull downReconstituted Complextwo hybrid | FSW = 0.0351
| Unknown | CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G18700 | Experimentaltwo hybrid | FSW = 0.1667
| Unknown | CIPK12 (CBL-INTERACTING PROTEIN KINASE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G23000 | Experimentaltwo hybridtwo hybrid | FSW = 0.1506
| Unknown | CIPK7 (CBL-INTERACTING PROTEIN KINASE 7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G30960 | Experimentaltwo hybrid | FSW = 0.0789
| Unknown | SIP3 (SOS3-INTERACTING PROTEIN 3) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G25090 | Experimental | FSW = 0.1364
| Unknown | CIPK16 (CBL-INTERACTING PROTEIN KINASE 16) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G17510 | Experimentalpull downfar western blottingtwo hybridReconstituted Complex | FSW = 0.1600
| Unknown | CIPK1 (CBL-INTERACTING PROTEIN KINASE 1) KINASE/ PROTEIN BINDING |
AT5G35410 | Experimentaltwo hybridprotein complementation assay | FSW = 0.0656
| Unknown | SOS2 (SALT OVERLY SENSITIVE 2) KINASE/ PROTEIN KINASE |
AT2G30360 | Experimentaltwo hybridtwo hybridAffinity Capture-Westernaffinity technology | FSW = 0.1219
| Unknown | SIP4 (SOS3-INTERACTING PROTEIN 4) KINASE/ PROTEIN KINASE |
AT5G07070 | Experimental | FSW = 0.0652
| Unknown | CIPK2 (CBL-INTERACTING PROTEIN KINASE 2) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G14580 | Experimentaltwo hybrid | FSW = 0.2327
| Unknown | CIPK4 (CBL-INTERACTING PROTEIN KINASE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G01140 | Experimentaltwo hybridtwo hybrid | FSW = 0.1280
| Unknown | CIPK9 (CBL-INTERACTING PROTEIN KINASE 9) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G04885 | Experimental | FSW = 0.0205
| Unknown | PCFS4 (PCF11P-SIMILAR PROTEIN 4) ZINC ION BINDING |
AT4G26570 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.6914
| Class C:vacuole | ATCBL3 (ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3) CALCIUM ION BINDING |
AT4G16350 | PredictedGene fusion methodCo-expression | FSW = 0.3683
| Unknown | CBL6 (CALCINEURIN B-LIKE PROTEIN 6) CALCIUM ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454