Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G56000 - ( heat shock protein 81-4 (HSP81-4) )
50 Proteins interacs with AT5G56000Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G14960 | PredictedAffinity Capture-Western | FSW = 0.0118
| Class C:vacuoleplasma membrane | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G24190 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.2348
| Class C:vacuoleplasma membrane | SHD (SHEPHERD) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT4G39080 | Predictedtwo hybrid | FSW = 0.0476
| Class C:vacuoleplasma membrane | VHA-A3 (VACUOLAR PROTON ATPASE A3) ATPASE |
AT2G04030 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.1644
| Class C:vacuole | CR88 ATP BINDING |
AT4G22670 | PredictedAffinity Capture-MSin vitro | FSW = 0.0833
| Class C:vacuole | ATHIP1 (ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 1) BINDING |
AT5G56030 | PredictedEnriched domain pairGene fusion methodGene neighbors methodPhylogenetic profile method | FSW = 0.0858
| Class C:plasma membranecytosol | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
AT5G56010 | PredictedEnriched domain pairGene fusion methodGene neighbors methodPhylogenetic profile method | FSW = 0.2414
| Class C:plasma membranecytosol | HSP81-3 ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G52640 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.0505
| Class C:plasma membranecytosol | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT4G02450 | Predictedin vivoin vivo | FSW = 0.0683
| Class C:plasma membrane | GLYCINE-RICH PROTEIN |
AT5G02490 | Predictedin vivoAffinity Capture-MS | FSW = 0.0335
| Class C:plasma membrane | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT1G48050 | Predictedtwo hybrid | FSW = 0.0714
| Class C:cytosol | KU80 DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING |
AT3G08730 | Predictedin vivoAffinity Capture-MS | FSW = 0.0109
| Class C:cytosol | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G61730 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0503
| Unknown | DNA-BINDING STOREKEEPER PROTEIN-RELATED |
AT3G12050 | Predictedin vitroin vivotwo hybrid | FSW = 0.0574
| Unknown | AHA1 DOMAIN-CONTAINING PROTEIN |
AT5G24360 | Predictedin vivo | FSW = 0.0216
| Unknown | IRE1-1 (INOSITOL REQUIRING 1-1) ATP BINDING / ENDORIBONUCLEASE PRODUCING 5-PHOSPHOMONOESTERS / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G14080 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.0215
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT4G19610 | Predictedtwo hybrid | FSW = 0.0306
| Unknown | RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT4G32420 | Predictedin vitroReconstituted Complex | FSW = 0.0646
| Unknown | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN |
AT5G16820 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0868
| Unknown | HSF3 (HEAT SHOCK FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR |
AT4G34390 | Predictedin vitroin vivotwo hybridAffinity Capture-MS | FSW = 0.0353
| Unknown | XLG2 (EXTRA-LARGE GTP-BINDING PROTEIN 2) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER |
AT1G16870 | Predictedin vitroin vivo | FSW = 0.0833
| Unknown | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S29-RELATED |
AT3G07770 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.1567
| Unknown | ATP BINDING |
AT4G31180 | PredictedAffinity Capture-MS | FSW = 0.0638
| Unknown | ASPARTYL-TRNA SYNTHETASE PUTATIVE / ASPARTATE--TRNA LIGASE PUTATIVE |
AT5G53360 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0468
| Unknown | SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN |
AT2G42810 | Predictedin vivo | FSW = 0.0744
| Unknown | PP52 (PROTEIN PHOSPHATASE 52) PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G66130 | Predictedtwo hybrid | FSW = 0.0269
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT5G03730 | Predictedin vivoin vitroAffinity Capture-MS | FSW = 0.0281
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT1G11800 | Predictedtwo hybrid | FSW = 0.0317
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT2G14045 | Predictedtwo hybrid | FSW = 0.0333
| Unknown | UNKNOWN PROTEIN |
AT4G36690 | Predictedtwo hybrid | FSW = 0.0238
| Unknown | ATU2AF65A RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G22840 | Predictedtwo hybrid | FSW = 0.0267
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G59850 | Predictedtwo hybrid | FSW = 0.0057
| Unknown | 40S RIBOSOMAL PROTEIN S15A (RPS15AF) |
AT1G04130 | Predictedtwo hybrid | FSW = 0.0714
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT1G71790 | Predictedtwo hybrid | FSW = 0.0103
| Unknown | F-ACTIN CAPPING PROTEIN BETA SUBUNIT FAMILY PROTEIN |
AT4G12400 | Predictedtwo hybridin vitro | FSW = 0.0448
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
AT4G18465 | Predictedtwo hybrid | FSW = 0.0121
| Unknown | RNA HELICASE PUTATIVE |
AT5G57815 | Predictedtwo hybrid | FSW = 0.0193
| Unknown | CYTOCHROME C OXIDASE SUBUNIT 6B PUTATIVE |
AT1G25350 | PredictedAffinity Capture-MS | FSW = 0.0417
| Unknown | OVA9 (OVULE ABORTION 9) GLUTAMINE-TRNA LIGASE |
AT2G17900 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0606
| Unknown | SDG37 ZINC ION BINDING |
AT4G08320 | Predictedin vitroAffinity Capture-MS | FSW = 0.0224
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT5G04510 | PredictedAffinity Capture-MSin vivoin vitro | FSW = 0.0248
| Unknown | PDK1 (3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1) 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE/ KINASE/ PHOSPHOINOSITIDE BINDING / PROTEIN BINDING / PROTEIN KINASE |
AT5G21274 | Predictedin vitroin vivoAffinity Capture-MS | FSW = 0.0043
| Unknown | CAM6 (CALMODULIN 6) CALCIUM ION BINDING |
AT1G04730 | PredictedAffinity Capture-MS | FSW = 0.0078
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT2G36360 | PredictedAffinity Capture-MS | FSW = 0.0444
| Unknown | KELCH REPEAT-CONTAINING PROTEIN |
AT3G62120 | Predictedin vitroin vivo | FSW = 0.0256
| Unknown | TRNA SYNTHETASE CLASS II (G H P AND S) FAMILY PROTEIN |
AT4G11330 | Predictedin vivo | FSW = 0.0421
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
AT5G16850 | Predictedin vivo | FSW = 0.0902
| Unknown | ATTERT (TELOMERASE REVERSE TRANSCRIPTASE) TELOMERASE/ TELOMERIC TEMPLATE RNA REVERSE TRANSCRIPTASE |
AT5G48570 | Predictedin vitroin vivoin vivoin vitro | FSW = 0.0606
| Unknown | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PUTATIVE / FK506-BINDING PROTEIN PUTATIVE |
AT5G67380 | PredictedAffinity Capture-MSReconstituted Complex | FSW = 0.0075
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT4G16710 | PredictedPhenotypic Enhancement | FSW = 0.0137
| Unknown | GLYCOSYLTRANSFERASE FAMILY PROTEIN 28 |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454