Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G56150 - ( UBC30 (ubiquitin-conjugating enzyme 30) ubiquitin-protein ligase )

43 Proteins interacs with AT5G56150
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G11150

Predicted

two hybrid

two hybrid

FSW = 0.0319

Unknown

TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT1G36340

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5102

Unknown

UBC31 (UBIQUITIN-CONJUGATING ENZYME 31) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0010

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT4G14970Predicted

Reconstituted Complex

FSW = 0.0290

Unknown

UNKNOWN PROTEIN
AT1G16890

Predicted

Shared biological function

Phylogenetic profile method

FSW = 0.3220

Unknown

UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT1G64230

Predicted

Shared biological function

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.3097

Unknown

UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT5G47100

Predicted

two hybrid

FSW = 0.0076

Unknown

CBL9 CALCIUM ION BINDING
AT3G13550

Predicted

Phylogenetic profile method

FSW = 0.3158

Unknown

FUS9 (FUSCA 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G24270

Predicted

two hybrid

FSW = 0.0264

Unknown

SOS3 (SALT OVERLY SENSITIVE 3) CALCIUM ION BINDING / CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G53360

Predicted

two hybrid

Phenotypic Suppression

in vitro

Affinity Capture-MS

FSW = 0.0150

Unknown

SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN
AT3G12280

Predicted

Phenotypic Enhancement

FSW = 0.0046

Unknown

RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT5G04460

Predicted

Phenotypic Suppression

FSW = 0.0580

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT5G11300

Predicted

Phenotypic Suppression

FSW = 0.0174

Unknown

CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT2G16950

Predicted

two hybrid

two hybrid

FSW = 0.0080

Unknown

TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER
AT2G17200

Predicted

two hybrid

FSW = 0.0174

Unknown

UBIQUITIN FAMILY PROTEIN
AT2G38280

Predicted

two hybrid

two hybrid

FSW = 0.0365

Unknown

FAC1 (EMBRYONIC FACTOR1) AMP DEAMINASE
AT5G12210

Predicted

two hybrid

two hybrid

FSW = 0.0319

Unknown

GERANYLGERANYL TRANSFERASE TYPE II BETA SUBUNIT PUTATIVE / RAB GERANYLGERANYLTRANSFERASE BETA SUBUNIT PUTATIVE
AT5G48655

Predicted

two hybrid

FSW = 0.0702

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT1G34770

Predicted

two hybrid

FSW = 0.0079

Unknown

MAGE-8 ANTIGEN-RELATED
AT3G06820

Predicted

Reconstituted Complex

FSW = 0.1094

Unknown

MOV34 FAMILY PROTEIN
AT5G42470

Predicted

Reconstituted Complex

FSW = 0.0851

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 14 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BRAIN AND REPRODUCTIVE ORGAN-EXPRESSED (INTERPROIPR010358) HAS 125 BLAST HITS TO 120 PROTEINS IN 32 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 108 FUNGI - 0 PLANTS - 14 VIRUSES - 0 OTHER EUKARYOTES - 3 (SOURCE NCBI BLINK)
AT5G66070

Predicted

in vivo

in vitro

FSW = 0.0193

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT3G58040

Predicted

Phenotypic Suppression

FSW = 0.0264

Unknown

SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT1G47230

Predicted

Phenotypic Suppression

FSW = 0.0102

Unknown

CYCLIN PUTATIVE
AT3G60300

Predicted

two hybrid

FSW = 0.1667

Unknown

RWD DOMAIN-CONTAINING PROTEIN
AT2G17190

Predicted

two hybrid

Enriched domain pair

FSW = 0.0196

Unknown

UBIQUITIN FAMILY PROTEIN
AT3G07200

Predicted

two hybrid

Enriched domain pair

Co-expression

FSW = 0.0232

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT2G23780

Predicted

two hybrid

Enriched domain pair

Co-expression

FSW = 0.0463

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT1G19310

Predicted

two hybrid

Enriched domain pair

Co-expression

FSW = 0.1074

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT3G08690

Predicted

Shared biological function

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.7259

Unknown

UBC11 (UBIQUITIN-CONJUGATING ENZYME 11) UBIQUITIN-PROTEIN LIGASE
AT3G08700

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4584

Unknown

UBC12 (UBIQUITIN-CONJUGATING ENZYME 12) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE
AT3G55380

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.2986

Unknown

UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE
AT2G16740

Predicted

Shared biological function

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.1206

Unknown

UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT5G25760

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.4877

Unknown

PEX4 (PEROXIN4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G46460

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.3346

Unknown

UBC13 (UBIQUITIN-CONJUGATING ENZYME 13) UBIQUITIN-PROTEIN LIGASE
AT5G41700

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1479

Unknown

UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G62540

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.4512

Unknown

UBC3 (UBIQUITIN-CONJUGATING ENZYME 3) UBIQUITIN-PROTEIN LIGASE
AT5G53300

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

FSW = 0.4167

Unknown

UBC10 (UBIQUITIN-CONJUGATING ENZYME 10) UBIQUITIN-PROTEIN LIGASE
AT4G27960

Predicted

Gene fusion method

Phylogenetic profile method

FSW = 0.3378

Unknown

UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE
AT2G02760

Predicted

Shared biological function

Phylogenetic profile method

FSW = 0.1022

Unknown

ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT1G78870

Predicted

Shared biological function

Phylogenetic profile method

FSW = 0.2586

Unknown

UBC35 (UBIQUITIN-CONJUGATING ENZYME 35) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G42990

Predicted

Phylogenetic profile method

FSW = 0.4977

Unknown

UBC18 (UBIQUITIN-CONJUGATING ENZYME 18) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE
AT1G14400

Predicted

Phylogenetic profile method

FSW = 0.1215

Unknown

UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454