Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G56350 - ( pyruvate kinase putative )
41 Proteins interacs with AT5G56350Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G25960 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.4727
| Class C:plasma membranecytosol | PYRUVATE KINASE PUTATIVE |
AT4G26390 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.5763
| Class C:plasma membranecytosol | PYRUVATE KINASE PUTATIVE |
AT3G04050 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.2414
| Class C:plasma membranecytosol | PYRUVATE KINASE PUTATIVE |
AT3G55810 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.2188
| Class C:plasma membranecytosol | PYRUVATE KINASE PUTATIVE |
AT3G55650 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4727
| Class C:plasma membranecytosol | PYRUVATE KINASE PUTATIVE |
AT3G52990 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4390
| Class C:plasma membranecytosol | PYRUVATE KINASE PUTATIVE |
AT5G63680 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2193
| Class C:plasma membranecytosol | PYRUVATE KINASE PUTATIVE |
AT2G36580 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4552
| Class C:plasma membranecytosol | PYRUVATE KINASE PUTATIVE |
AT5G08570 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3096
| Class C:plasma membranecytosol | PYRUVATE KINASE PUTATIVE |
AT3G22890 | PredictedSynthetic Lethality | FSW = 0.0172
| Class C:plasma membrane | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT5G45420 | PredictedAffinity Capture-MS | FSW = 0.0107
| Class C:plasma membrane | MYB FAMILY TRANSCRIPTION FACTOR |
AT5G46630 | Predictedtwo hybridtwo hybrid | FSW = 0.0364
| Class C:plasma membrane | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
AT3G53960 | PredictedAffinity Capture-Western | FSW = 0.0443
| Class C:plasma membrane | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G44170 | Predictedtwo hybrid | FSW = 0.0376
| Unknown | ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ALDEHYDE DEHYDROGENASE (NAD) |
AT3G62870 | PredictedAffinity Capture-MS | FSW = 0.0054
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G20020 | Predictedtwo hybridtwo hybrid | FSW = 0.0118
| Unknown | RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT3G22960 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.4552
| Unknown | PKP-ALPHA PYRUVATE KINASE |
AT1G64190 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0580
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
AT1G26160 | PredictedAffinity Capture-MS | FSW = 0.0101
| Unknown | METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN |
AT4G23430 | PredictedSynthetic Lethality | FSW = 0.0043
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT5G52920 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4727
| Unknown | PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1) PYRUVATE KINASE |
AT1G32440 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.4727
| Unknown | PKP3 (PLASTIDIAL PYRUVATE KINASE 3) PYRUVATE KINASE |
AT5G35160 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1364
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE GOLGI APPARATUS EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NONASPANIN (TM9SF) (INTERPROIPR004240) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G126501) HAS 1053 BLAST HITS TO 1004 PROTEINS IN 163 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 478 FUNGI - 143 PLANTS - 250 VIRUSES - 0 OTHER EUKARYOTES - 182 (SOURCE NCBI BLINK) |
AT4G36250 | Predictedtwo hybrid | FSW = 0.0571
| Unknown | ALDH3F1 (ALDEHYDE DEHYDROGENASE 3F1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ALDEHYDE DEHYDROGENASE (NAD) |
AT2G47990 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0444
| Unknown | SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING |
AT3G13900 | PredictedSynthetic Lethality | FSW = 0.0118
| Unknown | ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM |
AT5G28060 | Predictedtwo hybrid | FSW = 0.0167
| Unknown | 40S RIBOSOMAL PROTEIN S24 (RPS24B) |
AT3G22880 | PredictedAffinity Capture-MS | FSW = 0.0107
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G15840 | Predictedtwo hybrid | FSW = 0.0404
| Unknown | PROTEIN BINDING |
AT1G67420 | Predictedtwo hybrid | FSW = 0.0404
| Unknown | PEPTIDASE |
AT5G15610 | Predictedtwo hybrid | FSW = 0.0260
| Unknown | PROTEASOME FAMILY PROTEIN |
AT2G26200 | Predictedtwo hybrid | FSW = 0.0800
| Unknown | EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S METHYLTRANSFERASE TYPE 12 (INTERPROIPR013217) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS METHYLTRANSFERASE (TAIRAT1G546501) HAS 1504 BLAST HITS TO 1429 PROTEINS IN 277 SPECIES ARCHAE - 33 BACTERIA - 213 METAZOA - 664 FUNGI - 202 PLANTS - 139 VIRUSES - 0 OTHER EUKARYOTES - 253 (SOURCE NCBI BLINK) |
AT5G36160 | Predictedtwo hybrid | FSW = 0.0696
| Unknown | AMINOTRANSFERASE-RELATED |
AT3G46210 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.0533
| Unknown | 3 EXORIBONUCLEASE FAMILY DOMAIN 1-CONTAINING PROTEIN |
AT1G07820 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0851
| Unknown | HISTONE H4 |
AT1G27040 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0339
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT2G19220 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0734
| Unknown | UNKNOWN PROTEIN |
AT3G01100 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0556
| Unknown | HYP1 (HYPOTHETICAL PROTEIN 1) |
AT1G68200 | PredictedAffinity Capture-MS | FSW = 0.0135
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
AT3G53030 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0297
| Unknown | SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE |
AT5G53970 | Predictedtwo hybrid | FSW = 0.0533
| Unknown | AMINOTRANSFERASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454