Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G56360 - ( calmodulin-binding protein )

13 Proteins interacs with AT5G56360
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G61790

Predicted

in vivo

in vitro

Affinity Capture-MS

Co-expression

FSW = 0.0912

Unknown

CALNEXIN 1 (CNX1)
AT5G66680

Predicted

Phenotypic Enhancement

FSW = 0.0352

Unknown

DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE
AT5G23670

Predicted

two hybrid

FSW = 0.0683

Unknown

LCB2 PROTEIN BINDING / SERINE C-PALMITOYLTRANSFERASE
AT1G48830

Predicted

two hybrid

FSW = 0.0353

Unknown

40S RIBOSOMAL PROTEIN S7 (RPS7A)
AT5G63840

Predicted

Affinity Capture-MS

in vitro

Affinity Capture-MS

Affinity Capture-Western

co-fractionation

Co-fractionation

FSW = 0.0773

Unknown

RSW3 (RADIAL SWELLING 3) GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS
AT5G16130

Predicted

two hybrid

FSW = 0.1176

Unknown

40S RIBOSOMAL PROTEIN S7 (RPS7C)
AT1G73230

Predicted

Affinity Capture-MS

FSW = 0.0331

Unknown

NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN
AT3G15290

Predicted

two hybrid

FSW = 0.1667

Unknown

3-HYDROXYBUTYRYL-COA DEHYDROGENASE PUTATIVE
AT1G78590

Predicted

two hybrid

FSW = 0.2500

Unknown

NADK3 (NAD(H) KINASE 3) NAD+ KINASE/ NADH KINASE
AT5G17650

Predicted

two hybrid

FSW = 0.1111

Unknown

GLYCINE/PROLINE-RICH PROTEIN
AT3G48780

Predicted

two hybrid

two hybrid

FSW = 0.0529

Unknown

SPT1 (SERINE PALMITOYLTRANSFERASE 1) SERINE C-PALMITOYLTRANSFERASE
AT3G49470

Predicted

Affinity Capture-MS

FSW = 0.1008

Unknown

NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)
AT4G25120Predicted

two hybrid

FSW = 0.0078

Unknown

ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454