Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G56580 - ( MKK6 (MAP KINASE KINASE 6) MAP kinase kinase/ kinase )
35 Proteins interacs with AT5G56580Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G01370 | Experimental | FSW = 0.0539
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT4G14640 | Experimentalprotein array | FSW = 0.0036
| Unknown | CAM8 (CALMODULIN 8) CALCIUM ION BINDING |
AT2G46070 | Experimentalprotein kinase assay | FSW = 0.0837
| Unknown | MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE |
AT1G01560 | Experimental | FSW = 0.1626
| Unknown | ATMPK11 MAP KINASE/ KINASE |
AT1G07880 | Experimental | FSW = 0.0712
| Unknown | ATMPK13 MAP KINASE/ KINASE |
AT2G43790 | Experimental | FSW = 0.1000
| Unknown | ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE |
AT3G58500 | PredictedPhenotypic Suppression | FSW = 0.0237
| Unknown | PP2A-3 (PROTEIN PHOSPHATASE 2A-3) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G10450 | PredictedPhenotypic Enhancement | FSW = 0.0497
| Unknown | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G71860 | PredictedPhenotypic Suppression | FSW = 0.0923
| Unknown | PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE |
AT4G29810 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1807
| Unknown | ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2) MAP KINASE KINASE/ KINASE |
AT5G16570 | Predictedtwo hybrid | FSW = 0.0351
| Unknown | GLN14 GLUTAMATE-AMMONIA LIGASE |
AT5G45970 | PredictedPhenotypic SuppressionPhenotypic Suppression | FSW = 0.1144
| Unknown | ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING |
AT5G19330 | PredictedPhenotypic SuppressionPhenotypic Suppression | FSW = 0.0562
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN |
AT5G22220 | Predictedtwo hybrid | FSW = 0.0281
| Unknown | E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT3G08730 | Predictedin vivoin vitro | FSW = 0.0226
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G54100 | Predictedtwo hybrid | FSW = 0.0301
| Unknown | ALDH7B4 (ALDEHYDE DEHYDROGENASE 7B4) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT5G03840 | Predictedin vivoin vitroAffinity Capture-WesternReconstituted Complex | FSW = 0.1060
| Unknown | TFL1 (TERMINAL FLOWER 1) PHOSPHATIDYLETHANOLAMINE BINDING |
AT5G03730 | Predictedin vivoPhenotypic EnhancementPhenotypic EnhancementPhenotypic SuppressionPhenotypic SuppressionPhenotypic SuppressionPhenotypic SuppressionPhenotypic SuppressionPhenotypic SuppressionPhenotypic SuppressionPhenotypic Suppressionin vivoin vitroAffinity Capture-MSAffinity Capture-Western | FSW = 0.1600
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT5G56600 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.0800
| Unknown | PRF3 (PROFILIN 3) ACTIN BINDING |
AT5G42970 | Predictedtwo hybrid | FSW = 0.0231
| Unknown | COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8) PROTEIN BINDING |
AT3G14290 | Predictedtwo hybrid | FSW = 0.0210
| Unknown | PAE2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G72340 | Predictedtwo hybrid | FSW = 0.0154
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
AT4G11330 | Predictedtwo hybridtwo hybridtwo hybridin vitroin vitroin vitroin vivoin vivoin vivoin vitroin vitroin vitroin vivoin vivoin vivoin vitroin vitroin vitroin vivoPhenotypic SuppressionPhenotypic SuppressionPhenotypic SuppressionPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancementtwo hybridbiochemicalAffinity Capture-Western | FSW = 0.1439
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
AT4G23930 | Predictedtwo hybrid | FSW = 0.0640
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S HARPIN-INDUCED 1 (INTERPROIPR010847) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PROLINE-RICH FAMILY PROTEIN (TAIRAT1G644501) HAS 80 BLAST HITS TO 75 PROTEINS IN 8 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 0 PLANTS - 80 VIRUSES - 0 OTHER EUKARYOTES - 0 (SOURCE NCBI BLINK) |
AT5G12410 | Predictedtwo hybrid | FSW = 0.0308
| Unknown | THUMP DOMAIN-CONTAINING PROTEIN |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0244
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT4G38630 | Predictedtwo hybrid | FSW = 0.0021
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT1G54360 | PredictedPhenotypic Enhancement | FSW = 0.0839
| Unknown | TAF6B4 (TBP-ASSOCIATED FACTOR 6B4) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT4G21820 | PredictedPhenotypic Suppression | FSW = 0.1455
| Unknown | BINDING / CALMODULIN BINDING |
AT5G57610 | Predictedin vivoin vivoin vitroin vitroin vitroPhenotypic SuppressionPhenotypic SuppressionAffinity Capture-WesternbiochemicalAffinity Capture-MS | FSW = 0.2424
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G58690 | Predictedin vitroin vivotwo hybridAffinity Capture-MS | FSW = 0.0717
| Unknown | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
AT3G06230 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1620
| Unknown | ATMKK8 MAP KINASE KINASE/ KINASE |
AT1G18350 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2184
| Unknown | ATMKK7 MAP KINASE KINASE/ KINASE |
AT4G26070 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2118
| Unknown | MEK1 (MAP KINASE/ ERK KINASE 1) MAP KINASE KINASE/ KINASE/ PROTEIN BINDING |
AT1G73500 | PredictedPhylogenetic profile method | FSW = 0.1810
| Unknown | MKK9 (MAP KINASE KINASE 9) MAP KINASE KINASE/ KINASE/ PROTEIN KINASE ACTIVATOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454