Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G56740 - ( HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2) H4 histone acetyltransferase/ histone acetyltransferase )
43 Proteins interacs with AT5G56740Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G07660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0579
| Unknown | HISTONE H4 |
AT3G60840 | PredictedAffinity Capture-MS | FSW = 0.0476
| Unknown | MAP65-4 (MICROTUBULE-ASSOCIATED PROTEIN 65-4) |
AT3G44300 | PredictedSynthetic Lethality | FSW = 0.0658
| Unknown | NIT2 (NITRILASE 2) INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0052
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G25780 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0314
| Unknown | EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT5G59690 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0652
| Unknown | HISTONE H4 |
AT1G07790 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0450
| Unknown | HTB1 DNA BINDING |
AT1G26160 | PredictedSynthetic Lethality | FSW = 0.0523
| Unknown | METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN |
AT5G58230 | Predictedinteraction predictiontwo hybridCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1802
| Unknown | MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING |
AT5G56030 | PredictedAffinity Capture-MS | FSW = 0.0159
| Unknown | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
AT2G01630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridtwo hybrid | FSW = 0.0255
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN / BETA-13-GLUCANASE PUTATIVE |
AT5G52640 | PredictedAffinity Capture-MS | FSW = 0.0068
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT4G11420 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0493
| Unknown | EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR |
AT5G04990 | Predictedtwo hybridtwo hybrid | FSW = 0.0109
| Unknown | SAD1/UNC-84 PROTEIN-RELATED |
AT4G16830 | PredictedAffinity Capture-MS | FSW = 0.0171
| Unknown | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT4G30860 | PredictedAffinity Capture-MS | FSW = 0.0460
| Unknown | SDG4 (SET DOMAIN GROUP 4) HISTONE METHYLTRANSFERASE |
AT1G44900 | PredictedAffinity Capture-MSsynthetic growth defectinteraction predictionCo-expression | FSW = 0.0400
| Unknown | ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0095
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G02740 | PredictedPhenotypic Enhancement | FSW = 0.0066
| Unknown | CHROMATIN BINDING |
AT1G14690 | PredictedAffinity Capture-MS | FSW = 0.0513
| Unknown | MAP65-7 (MICROTUBULE-ASSOCIATED PROTEIN 65-7) |
AT2G37560 | PredictedSynthetic LethalityAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternPhenotypic EnhancementCo-expression | FSW = 0.0962
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT1G08880 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0918
| Unknown | H2AXA DNA BINDING |
AT1G65970 | PredictedAffinity Capture-MS | FSW = 0.0479
| Unknown | TPX2 (THIOREDOXIN-DEPENDENT PEROXIDASE 2) ANTIOXIDANT/ OXIDOREDUCTASE |
AT2G26695 | PredictedSynthetic Lethality | FSW = 0.0729
| Unknown | BINDING / ZINC ION BINDING |
AT2G34180 | PredictedSynthetic Lethality | FSW = 0.0384
| Unknown | CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G47970 | PredictedAffinity Capture-MS | FSW = 0.0174
| Unknown | NPL4 FAMILY PROTEIN |
AT3G16080 | PredictedAffinity Capture-MS | FSW = 0.0741
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37C) |
AT3G46320 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0664
| Unknown | HISTONE H4 |
AT3G56150 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0400
| Unknown | EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) TRANSLATION INITIATION FACTOR |
AT4G12620 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0769
| Unknown | ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING |
AT4G27640 | PredictedReconstituted Complex | FSW = 0.1048
| Unknown | IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN |
AT4G37680 | PredictedAffinity Capture-MS | FSW = 0.0360
| Unknown | HHP4 (HEPTAHELICAL PROTEIN 4) RECEPTOR |
AT1G65560 | PredictedAffinity Capture-MS | FSW = 0.0784
| Unknown | ALLYL ALCOHOL DEHYDROGENASE PUTATIVE |
AT3G25100 | PredictedSynthetic LethalityCo-expression | FSW = 0.0339
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
AT5G10390 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0903
| Unknown | HISTONE H3 |
AT5G10400 | PredictedAffinity Capture-MS | FSW = 0.0805
| Unknown | HISTONE H3 |
AT5G10830 | PredictedAffinity Capture-MS | FSW = 0.0295
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT5G02530 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0067
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G65990 | PredictedAffinity Capture-MS | FSW = 0.0316
| Unknown | TYPE 2 PEROXIREDOXIN-RELATED / THIOL SPECIFIC ANTIOXIDANT / MAL ALLERGEN FAMILY PROTEIN |
AT1G15250 | PredictedAffinity Capture-MS | FSW = 0.0851
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37A) |
AT1G26320 | PredictedAffinity Capture-MS | FSW = 0.0129
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G09200 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0970
| Unknown | HISTONE H3 |
AT3G22860 | PredictedAffinity Capture-MS | FSW = 0.0576
| Unknown | TIF3C2 TRANSLATION INITIATION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454