Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G56940 - ( ribosomal protein S16 family protein )

12 Proteins interacs with AT5G56940
LocusMethodFSW Cellular Compartment Classification (C3)Description
ATCG00160Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1024

Class C:

plastid

CHLOROPLAST RIBOSOMAL PROTEIN S2
ATCG01240Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0972

Class C:

plastid

30S CHLOROPLAST RIBOSOMAL PROTEIN S7
AT5G17920

Predicted

Affinity Capture-MS

FSW = 0.0970

Unknown

ATMS1 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE-HOMOCYSTEINE S-METHYLTRANSFERASE/ COPPER ION BINDING / METHIONINE SYNTHASE
AT1G65540

Predicted

Affinity Capture-MS

FSW = 0.1736

Unknown

CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT3G58510

Predicted

Affinity Capture-MS

FSW = 0.0761

Unknown

DEAD BOX RNA HELICASE PUTATIVE (RH11)
AT1G64600

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3810

Unknown

COPPER ION BINDING / METHYLTRANSFERASE
AT2G30660

Predicted

Affinity Capture-MS

FSW = 0.3920

Unknown

3-HYDROXYISOBUTYRYL-COENZYME A HYDROLASE PUTATIVE / COA-THIOESTER HYDROLASE PUTATIVE
AT3G49080

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1875

Unknown

RIBOSOMAL PROTEIN S9 FAMILY PROTEIN
AT2G02760

Predicted

synthetic growth defect

FSW = 0.0070

Unknown

ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT2G33840

Predicted

two hybrid

interaction prediction

FSW = 0.0970

Unknown

TRNA SYNTHETASE CLASS I (W AND Y) FAMILY PROTEIN
AT2G36930

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0278

Unknown

ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN
AT3G17660

Predicted

two hybrid

FSW = 0.0667

Unknown

AGD15 (ARF-GAP DOMAIN 15) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454