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AT5G57015 - ( ckl12 (Casein Kinase I-like 12) ATP binding / kinase/ protein kinase/ protein serine/threonine kinase )

94 Proteins interacs with AT5G57015

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT4G14880	Predicted Affinity Capture-MS	FSW = 0.0055	Class C: nucleus cytosol	OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) CYSTEINE SYNTHASE
AT1G72710	Predicted Phylogenetic profile method	FSW = 0.0222	Class C: nucleus cytosol	CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G16640	Predicted Affinity Capture-MS	FSW = 0.0204	Class C: nucleus	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)
AT5G15200	Predicted Affinity Capture-MS	FSW = 0.0905	Class C: nucleus	40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT5G20290	Predicted Affinity Capture-MS	FSW = 0.0521	Class C: nucleus	40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT5G59690	Predicted Affinity Capture-MS	FSW = 0.0188	Class C: nucleus	HISTONE H4
AT3G58510	Predicted Affinity Capture-MS	FSW = 0.0578	Class C: nucleus	DEAD BOX RNA HELICASE PUTATIVE (RH11)
AT5G22220	Predicted Phenotypic Enhancement	FSW = 0.0066	Class C: nucleus	E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT1G79830	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0118	Class C: nucleus	GC5 (GOLGIN CANDIDATE 5) PROTEIN BINDING
AT4G13980	Predicted biochemical	FSW = 0.0031	Class C: nucleus	AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR
AT5G37720	Predicted Affinity Capture-MS	FSW = 0.0173	Class C: nucleus	RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT3G07050	Predicted interaction prediction	FSW = 0.0111	Class C: nucleus	GTP-BINDING FAMILY PROTEIN
AT3G18130	Predicted Affinity Capture-MS	FSW = 0.0358	Class C: nucleus	RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING
AT2G29570	Predicted two hybrid	FSW = 0.0049	Class C: nucleus	PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR
AT4G25340	Predicted Affinity Capture-MS interaction prediction Enriched domain pair	FSW = 0.0156	Class C: nucleus	IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT5G09650	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0094	Class C: cytosol	ATPPA6 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 6) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT2G14120	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0073	Class C: cytosol	DYNAMIN-LIKE PROTEIN 2B (ADL2B)
AT2G17360	Predicted Affinity Capture-MS	FSW = 0.0400	Unknown	40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT3G47520	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0076	Unknown	MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT5G11710	Predicted biochemical	FSW = 0.0087	Unknown	EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN / CLATHRIN ASSEMBLY PROTEIN-RELATED
AT1G07770	Predicted Affinity Capture-MS	FSW = 0.0566	Unknown	RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G62870	Predicted synthetic growth defect	FSW = 0.0109	Unknown	60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G30470	Predicted Affinity Capture-MS	FSW = 0.0435	Unknown	SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN
AT1G32410	Predicted biochemical	FSW = 0.0367	Unknown	VACUOLAR PROTEIN SORTING 55 FAMILY PROTEIN / VPS55 FAMILY PROTEIN
AT4G26100	Predicted Phylogenetic profile method	FSW = 0.0222	Unknown	CK1 (CASEIN KINASE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G19980	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0119	Unknown	ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT4G26970	Predicted interaction prediction	FSW = 0.0145	Unknown	ACONITATE HYDRATASE/ COPPER ION BINDING
AT3G59760	Predicted interaction prediction	FSW = 0.0061	Unknown	OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C) ATP BINDING / CYSTEINE SYNTHASE
AT4G35800	Predicted Affinity Capture-MS Reconstituted Complex	FSW = 0.0094	Unknown	NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT4G03200	Predicted two hybrid	FSW = 0.0412	Unknown	CATALYTIC
AT5G53480	Predicted in vitro	FSW = 0.0070	Unknown	IMPORTIN BETA-2 PUTATIVE
AT3G29320	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0323	Unknown	GLUCAN PHOSPHORYLASE PUTATIVE
AT4G35830	Predicted Affinity Capture-MS	FSW = 0.0432	Unknown	ACONITATE HYDRATASE CYTOPLASMIC / CITRATE HYDRO-LYASE / ACONITASE (ACO)
AT2G25070	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0313	Unknown	PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE
AT1G20970	Predicted interaction prediction	FSW = 0.0263	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE VACUOLE EXPRESSED IN GUARD CELL CULTURED CELL BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PPI1 (PROTON PUMP INTERACTOR 1) PROTEIN BINDING (TAIRAT4G275001) HAS 53409 BLAST HITS TO 33585 PROTEINS IN 1572 SPECIES ARCHAE - 464 BACTERIA - 7066 METAZOA - 25076 FUNGI - 5173 PLANTS - 1740 VIRUSES - 257 OTHER EUKARYOTES - 13633 (SOURCE NCBI BLINK)
AT1G21630	Predicted interaction prediction	FSW = 0.0075	Unknown	CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT1G56330	Predicted interologs mapping	FSW = 0.0249	Unknown	ATSAR1B (SECRETION-ASSOCIATED RAS 1 B) GTP BINDING
AT3G53870	Predicted Affinity Capture-MS biochemical	FSW = 0.0317	Unknown	40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT5G17550	Predicted Affinity Capture-MS	FSW = 0.0122	Unknown	PEX19-2
AT3G03490	Predicted interaction prediction	FSW = 0.0047	Unknown	PEX19-1 (PEROXIN 19-1)
AT4G02930	Predicted biochemical	FSW = 0.0079	Unknown	ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE
AT4G33730	Predicted biochemical	FSW = 0.0041	Unknown	PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT5G40820	Predicted two hybrid	FSW = 0.0202	Unknown	ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE
AT4G30800	Predicted Affinity Capture-MS	FSW = 0.0544	Unknown	40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT2G29540	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0072	Unknown	ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT5G20850	Predicted two hybrid interaction prediction	FSW = 0.0050	Unknown	ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT2G29900	Predicted Phenotypic Enhancement	FSW = 0.0090	Unknown	PRESENILIN FAMILY PROTEIN
AT3G05740	Predicted two hybrid	FSW = 0.0209	Unknown	RECQI1 (ARABIDOPSIS RECQ HELICASE L1) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G27350	Predicted two hybrid	FSW = 0.0283	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S RIBOSOME ASSOCIATED MEMBRANE RAMP4 (INTERPROIPR010580) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G273301) HAS 267 BLAST HITS TO 267 PROTEINS IN 83 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 183 FUNGI - 0 PLANTS - 55 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK)
AT2G05830	Predicted two hybrid	FSW = 0.0206	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN
AT3G53710	Predicted Affinity Capture-MS in vitro	FSW = 0.0153	Unknown	AGD6 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT5G23420	Predicted in vitro	FSW = 0.0249	Unknown	HMGB6 TRANSCRIPTION FACTOR
AT3G55480	Predicted in vivo in vitro	FSW = 0.0147	Unknown	ADAPTIN FAMILY PROTEIN
AT5G16040	Predicted in vivo in vitro	FSW = 0.0088	Unknown	REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN
AT5G49310	Predicted in vitro	FSW = 0.0280	Unknown	IMPA-5 (IMPORTIN ALPHA ISOFORM 5) BINDING / PROTEIN TRANSPORTER
AT1G26450	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0024	Unknown	BETA-13-GLUCANASE-RELATED
AT1G31660	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS biochemical interaction prediction	FSW = 0.0779	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G42440	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.1136	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK)
AT1G49540	Predicted Affinity Capture-MS	FSW = 0.0180	Unknown	NUCLEOTIDE BINDING
AT1G53880	Predicted Affinity Capture-MS	FSW = 0.0080	Unknown	GTP BINDING / TRANSLATION INITIATION FACTOR
AT1G74310	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0043	Unknown	ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT2G15230	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0136	Unknown	ATLIP1 (ARABIDOPSIS THALIANA LIPASE 1) GALACTOLIPASE/ HYDROLASE/ PHOSPHOLIPASE/ TRIACYLGLYCEROL LIPASE
AT2G23070	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0088	Unknown	CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT2G28360	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0913	Unknown	INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK)
AT2G38280	Predicted biochemical	FSW = 0.0175	Unknown	FAC1 (EMBRYONIC FACTOR1) AMP DEAMINASE
AT2G39840	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0359	Unknown	TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G43650	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0115	Unknown	EMB2777 (EMBRYO DEFECTIVE 2777)
AT2G47420	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0637	Unknown	DIMETHYLADENOSINE TRANSFERASE PUTATIVE
AT3G08560	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0063	Unknown	VHA-E2 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 2) HYDROGEN-EXPORTING ATPASE PHOSPHORYLATIVE MECHANISM / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G09720	Predicted Affinity Capture-MS	FSW = 0.0072	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT3G10530	Predicted Affinity Capture-MS	FSW = 0.0152	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G19240	Predicted biochemical	FSW = 0.0127	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN N-TERMINAL PROTEIN MYRISTOYLATION LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S WD40 REPEAT-LIKE (INTERPROIPR011046) VACUOLAR IMPORT AND DEGRADATION VID27-RELATED (INTERPROIPR013863) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS DEM PROTEIN-RELATED / DEFECTIVE EMBRYO AND MERISTEMS PROTEIN-RELATED (TAIRAT4G334001) HAS 206 BLAST HITS TO 202 PROTEINS IN 88 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 11 FUNGI - 117 PLANTS - 38 VIRUSES - 0 OTHER EUKARYOTES - 40 (SOURCE NCBI BLINK)
AT3G20250	Predicted Affinity Capture-MS	FSW = 0.0459	Unknown	APUM5 (ARABIDOPSIS PUMILIO 5) RNA BINDING / BINDING
AT3G49470	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0294	Unknown	NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)
AT3G51270	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS co-fractionation Co-fractionation interaction prediction	FSW = 0.1252	Unknown	ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE
AT3G59410	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0133	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT4G14160	Predicted Affinity Capture-MS interologs mapping interaction prediction	FSW = 0.0090	Unknown	TRANSPORT PROTEIN PUTATIVE
AT4G16630	Predicted biochemical	FSW = 0.0033	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE (RH28)
AT4G26780	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0147	Unknown	AR192 ADENYL-NUCLEOTIDE EXCHANGE FACTOR/ CHAPERONE BINDING / PROTEIN BINDING / PROTEIN HOMODIMERIZATION
AT5G13570	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0162	Unknown	DCP2 (DECAPPING 2) HYDROLASE/ M7G(5)PPPN DIPHOSPHATASE/ MRNA BINDING / PROTEIN HOMODIMERIZATION
AT5G13680	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0377	Unknown	ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR
AT5G25800	Predicted biochemical	FSW = 0.0102	Unknown	EXONUCLEASE FAMILY PROTEIN
AT5G27470	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0118	Unknown	SERYL-TRNA SYNTHETASE / SERINE--TRNA LIGASE
AT5G46180	Predicted Affinity Capture-MS biochemical interaction prediction	FSW = 0.0066	Unknown	DELTA-OAT ORNITHINE-OXO-ACID TRANSAMINASE
AT5G50320	Predicted synthetic growth defect Affinity Capture-MS	FSW = 0.0130	Unknown	ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE
AT3G43980	Predicted Affinity Capture-Western	FSW = 0.0153	Unknown	40S RIBOSOMAL PROTEIN S29 (RPS29A)
AT5G41190	Predicted Affinity Capture-MS	FSW = 0.0524	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT5G50550	Predicted Synthetic Rescue	FSW = 0.0262	Unknown	WD-40 REPEAT FAMILY PROTEIN / ST12P PROTEIN PUTATIVE
AT5G64670	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0110	Unknown	RIBOSOMAL PROTEIN L15 FAMILY PROTEIN
AT5G66640	Predicted biochemical	FSW = 0.0018	Unknown	DAR3 (DA1-RELATED PROTEIN 3)
AT5G57950	Predicted biochemical	FSW = 0.0269	Unknown	26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT5G10660	Predicted interaction prediction	FSW = 0.0082	Unknown	CALMODULIN-BINDING PROTEIN-RELATED
AT1G72340	Predicted interaction prediction	FSW = 0.0061	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN
AT3G19130	Predicted Gene fusion method	FSW = 0.0106	Unknown	ATRBP47B (RNA-BINDING PROTEIN 47B) RNA BINDING

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT5G57015 - ( ckl12 (Casein Kinase I-like 12) ATP binding / kinase/ protein kinase/ protein serine/threonine kinase )

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