Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G57090 - ( EIR1 (ETHYLENE INSENSITIVE ROOT 1) auxin efflux transmembrane transporter/ auxinhydrogen symporter/ transporter )

10 Proteins interacs with AT5G57090
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G34650

Experimental

interaction detection method

FSW = 0.0745

Class A:

plasma membrane

Class B:

unclear

endoplasmic reticulum

PID (PINOID) KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G28860

Experimental

confocal microscopy

two hybrid

FSW = 0.0887

Class A:

plasma membrane

Class B:

endoplasmic reticulum

ABCB19 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / AUXIN EFFLUX TRANSMEMBRANE TRANSPORTER
AT2G36910

Experimental

confocal microscopy

FSW = 0.0952

Class A:

plasma membrane

Class B:

endoplasmic reticulum

ABCB1 (ATP BINDING CASSETTE SUBFAMILY B1) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / AUXIN EFFLUX TRANSMEMBRANE TRANSPORTER/ CALMODULIN BINDING
AT1G25490

Experimental

FSW = 0.0800

Class A:

plasma membrane

Class B:

endoplasmic reticulum

RCN1 (ROOTS CURL IN NPA) PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT4G08500

Experimental

FSW = 0.0159

Unknown

MEKK1 (MAP KINASE KINASE KINASE 1) DNA BINDING / MAP KINASE KINASE KINASE/ KINASE/ KINASE BINDING / PROTEIN BINDING
AT1G59980

Experimental

confocal microscopy

FSW = 0.1641

Unknown

ARL2 (ARG1-LIKE 2) HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING
AT1G77110

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0462

Class C:

plasma membrane

PIN6 (PIN-FORMED 6) AUXINHYDROGEN SYMPORTER/ TRANSPORTER
AT1G63780

Predicted

two hybrid

FSW = 0.0595

Unknown

IMP4
AT4G34370

Predicted

two hybrid

FSW = 0.0269

Unknown

ARI1 (ARIADNE) PROTEIN BINDING / ZINC ION BINDING
AT5G15750

Predicted

two hybrid

FSW = 0.0493

Unknown

RNA-BINDING S4 DOMAIN-CONTAINING PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454