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AT5G57120 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN nucleolus EXPRESSED IN 21 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s LisH dimerisation motif (InterProIPR006594) SRP40 C-terminal (InterProIPR007718) Has 90949 Blast hits to 45608 proteins in 1620 species Archae - 300 Bacteria - 8281 Metazoa - 37603 Fungi - 8095 Plants - 3374 Viruses - 548 Other Eukaryotes - 32748 (source NCBI BLink) )

4 Proteins interacs with AT5G57120

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT5G10450	Predicted Affinity Capture-MS	FSW = 0.0092	Class C: nucleus	GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT3G57660	Predicted in vivo in vitro	FSW = 0.0211	Class C: nucleus	NRPA1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ ZINC ION BINDING
AT5G22030	Predicted in vivo	FSW = 0.0529	Unknown	UBP8 (UBIQUITIN-SPECIFIC PROTEASE 8) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT5G47080	Predicted in vivo in vitro	FSW = 0.0196	Unknown	CKB1 PROTEIN KINASE REGULATOR

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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