Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G57160 - ( ATLIG4 DNA ligase (ATP)/ protein binding )
32 Proteins interacs with AT5G57160Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G23100 | Experimentaltwo hybrid | FSW = 0.1250
| Unknown | XRCC4 PROTEIN C-TERMINUS BINDING |
AT2G05710 | PredictedAffinity Capture-MS | FSW = 0.1012
| Unknown | ACONITATE HYDRATASE CYTOPLASMIC PUTATIVE / CITRATE HYDRO-LYASE/ACONITASE PUTATIVE |
AT4G26970 | Predictedinteraction prediction | FSW = 0.0271
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT5G16630 | PredictedPhenotypic Enhancement | FSW = 0.0478
| Unknown | RAD4 DAMAGED DNA BINDING |
AT1G06380 | PredictedAffinity Capture-MS | FSW = 0.0664
| Unknown | RIBOSOMAL PROTEIN-RELATED |
AT3G54670 | PredictedPhenotypic Suppression | FSW = 0.0046
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT3G48190 | PredictedProtein-peptide | FSW = 0.0400
| Unknown | ATM (ATAXIA-TELANGIECTASIA MUTATED) 1-PHOSPHATIDYLINOSITOL-3-PHOSPHATE 5-KINASE |
AT4G35830 | PredictedAffinity Capture-MS | FSW = 0.0822
| Unknown | ACONITATE HYDRATASE CYTOPLASMIC / CITRATE HYDRO-LYASE / ACONITASE (ACO) |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0128
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G44680 | PredictedPhenotypic Enhancement | FSW = 0.0293
| Unknown | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT5G04600 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0797
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT4G26600 | PredictedAffinity Capture-MS | FSW = 0.0355
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT3G58660 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0618
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
AT3G55620 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0948
| Unknown | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
AT3G23620 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1094
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT5G55920 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0771
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT1G51060 | PredictedPhenotypic Enhancement | FSW = 0.0305
| Unknown | HTA10 DNA BINDING |
AT1G07370 | PredictedPhenotypic Enhancement | FSW = 0.0132
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT3G19210 | PredictedPhenotypic Enhancement | FSW = 0.0105
| Unknown | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT5G15550 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1294
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G55410 | PredictedAffinity Capture-MS | FSW = 0.0455
| Unknown | 2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT PUTATIVE / OXOGLUTARATE DECARBOXYLASE PUTATIVE / ALPHA-KETOGLUTARIC DEHYDROGENASE PUTATIVE |
AT5G65750 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0558
| Unknown | 2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT PUTATIVE / OXOGLUTARATE DECARBOXYLASE PUTATIVE / ALPHA-KETOGLUTARIC DEHYDROGENASE PUTATIVE |
AT5G40820 | PredictedProtein-peptide | FSW = 0.0402
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT3G14890 | PredictedAffinity Capture-MS | FSW = 0.0714
| Unknown | PHOSPHOESTERASE |
AT1G23280 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1331
| Unknown | MAK16 PROTEIN-RELATED |
AT5G14520 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1133
| Unknown | PESCADILLO-RELATED |
AT5G41080 | PredictedAffinity Capture-MS | FSW = 0.1111
| Unknown | GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE FAMILY PROTEIN |
AT1G10520 | PredictedAffinity Capture-Westerninteraction prediction | FSW = 0.0241
| Unknown | DNA POLYMERASE LAMBDA (POLL) |
AT1G18090 | PredictedPhenotypic Enhancement | FSW = 0.0879
| Unknown | EXONUCLEASE PUTATIVE |
AT1G67500 | PredictedPhenotypic Suppression | FSW = 0.0470
| Unknown | ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT5G63670 | PredictedPhenotypic Enhancement | FSW = 0.0143
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT3G02040 | PredictedAffinity Capture-MS | FSW = 0.0909
| Unknown | SRG3 (SENESCENCE-RELATED GENE 3) GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE/ PHOSPHORIC DIESTER HYDROLASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454