Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G57360 - ( ZTL (ZEITLUPE) protein binding / ubiquitin-protein ligase )
26 Proteins interacs with AT5G57360| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G75950
   | Experimentaltwo hybridpull down | FSW = 0.1961
| Class A:nucleuscytosolClass B:plasma membraneClass D:cytosol (p = 0.67) | SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT2G18790
| Experimentaltwo hybridtwo hybridReconstituted Complexin vitro | FSW = 0.0607
| Class A:nucleuscytosolClass D:nucleus (p = 0.78)cytosol (p = 0.67) | PHYB (PHYTOCHROME B) G-PROTEIN COUPLED PHOTORECEPTOR/ PROTEIN HISTIDINE KINASE/ RED OR FAR-RED LIGHT PHOTORECEPTOR/ SIGNAL TRANSDUCER |
| AT2G18915
| Experimentaltwo hybrid | FSW = 0.3756
| Class A:nucleuscytosolClass D:nucleus (p = 0.78)cytosol (p = 0.67) | LKP2 (LOV KELCH PROTEIN 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT4G08920
| Experimentaltwo hybridReconstituted Complexin vitro | FSW = 0.0613
| Class A:nucleuscytosolClass D:cytosol (p = 0.67) | CRY1 (CRYPTOCHROME 1) ATP BINDING / BLUE LIGHT PHOTORECEPTOR/ PROTEIN HOMODIMERIZATION/ PROTEIN KINASE |
| AT1G56280
| Experimentaltwo hybrid | FSW = 0.1091
| Class A:nucleusClass B:peroxisomecytosolClass D:nucleus (p = 0.78) | ATDI19 |
| AT1G22770
| Experimentaltwo hybridpull downReconstituted ComplexAffinity Capture-WesternPhenotypic Enhancementaffinity technologyin vitro | FSW = 0.1420
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | GI (GIGANTEA) |
| AT5G61380
| Experimentaltwo hybridaffinity technologytwo hybridaffinity technologyaffinity technologyAffinity Capture-WesternReconstituted ComplexAffinity Capture-WesternAffinity Capture-Westerntwo hybrid3 hybrid methodReconstituted Complexin vitroaffinity technologytwo hybrid | FSW = 0.1008
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | TOC1 (TIMING OF CAB EXPRESSION 1) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
| AT1G20140
| Experimentaltwo hybrid | FSW = 0.2516
| Class A:nucleusClass B:cytosolClass D:cytosol (p = 0.67) | ASK4 (ARABIDOPSIS SKP1-LIKE 4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT4G33430
| Experimental | FSW = 0.1558
| Class B:plasma membranenucleusextracellularcytosolClass D:cytosol (p = 0.67) | BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE) KINASE/ PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN SERINE/THREONINE KINASE |
| AT1G30950
| Experimental | FSW = 0.3887
| Class D:unclear (p = 0.09)nucleus (p = 0.78) | UFO (UNUSUAL FLORAL ORGANS) TRANSCRIPTION FACTOR BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT5G24470
| Experimentalin vitroaffinity technologyReconstituted Complextwo hybridReconstituted ComplexAffinity Capture-WesternAffinity Capture-Westerntwo hybridReconstituted ComplexPhenotypic Suppressiontwo hybridin vitro | FSW = 0.1376
| Class D:nucleus (p = 0.78) | APRR5 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 5) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
| AT2G25930
| ExperimentalPhenotypic Suppression | FSW = 0.1214
| Class D:nucleus (p = 0.78) | ELF3 (EARLY FLOWERING 3) PROTEIN C-TERMINUS BINDING / TRANSCRIPTION FACTOR |
| AT4G02570
| ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.1610
| Class D:cytosol (p = 0.67) | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING |
| AT5G20570
| ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.0521
| Unknown | RBX1 (RING-BOX 1) PROTEIN BINDING |
| AT1G10940
| Experimentaltwo hybridtwo hybridtwo hybridReconstituted ComplexAffinity Capture-Westernaffinity technologyin vitro | FSW = 0.0781
| Unknown | SNRK24 (SNF1-RELATED PROTEIN KINASE 24) KINASE |
| AT5G42190
| Experimentaltwo hybrid | FSW = 0.1209
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT4G34210
| Experimentaltwo hybrid | FSW = 0.3198
| Unknown | ASK11 (ARABIDOPSIS SKP1-LIKE 11) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT2G03170
| Experimental | FSW = 0.4669
| Unknown | ASK14 (ARABIDOPSIS SKP1-LIKE 14) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT2G25700
| Experimentaltwo hybrid | FSW = 0.3674
| Unknown | ASK3 (ARABIDOPSIS SKP1-LIKE 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT3G21850
| Experimentaltwo hybrid | FSW = 0.4122
| Unknown | ASK9 (ARABIDOPSIS SKP1-LIKE 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT3G21840
| Experimentaltwo hybrid | FSW = 0.1379
| Unknown | ASK7 (ARABIDOPSIS SKP1-LIKE 7) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT3G21830
| Experimentaltwo hybrid | FSW = 0.4392
| Unknown | ASK8 (ARABIDOPSIS SKP1-LIKE 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT2G03160
| Experimentaltwo hybrid | FSW = 0.3355
| Unknown | ASK19 (ARABIDOPSIS SKP1-LIKE 19) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT2G01620
| Experimental | FSW = 0.4914
| Unknown | MEE11 (MATERNAL EFFECT EMBRYO ARREST 11) |
| AT4G34470
| Experimentaltwo hybrid | FSW = 0.3692
| Unknown | ASK12 (ARABIDOPSIS SKP1-LIKE 12) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT3G48360
| Experimentalfar western blotting | FSW = 0.0552
| Unknown | BT2 (BTB AND TAZ DOMAIN PROTEIN 2) PROTEIN BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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