Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G57490 - ( VDAC4 (VOLTAGE DEPENDENT ANION CHANNEL 4) voltage-gated anion channel )

11 Proteins interacs with AT5G57490
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G15090

Predicted

Gene fusion method

Co-expression

FSW = 0.0764

Class C:

unclear

plasma membrane

mitochondrion

VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL
AT5G62880

Predicted

Affinity Capture-MS

FSW = 0.0264

Class C:

plasma membrane

ARAC10 GTP BINDING
AT5G23900

Predicted

Affinity Capture-MS

FSW = 0.0141

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L13 (RPL13D)
AT5G25754Predicted

two hybrid

FSW = 0.0683

Class C:

plasma membrane

UNKNOWN PROTEIN
AT4G12770

Predicted

two hybrid

FSW = 0.0937

Class C:

plasma membrane

HEAT SHOCK PROTEIN BINDING
AT3G49920

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0301

Class C:

mitochondrion

VDAC5 (VOLTAGE DEPENDENT ANION CHANNEL 5) VOLTAGE-GATED ANION CHANNEL
AT1G71790

Predicted

two hybrid

FSW = 0.0350

Unknown

F-ACTIN CAPPING PROTEIN BETA SUBUNIT FAMILY PROTEIN
AT1G05785

Predicted

Affinity Capture-MS

FSW = 0.0245

Unknown

GOT1-LIKE FAMILY PROTEIN
AT1G26320

Predicted

Synthetic Lethality

FSW = 0.0107

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT3G12200

Predicted

Affinity Capture-MS

FSW = 0.0076

Unknown

ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G45190

Predicted

Affinity Capture-MS

FSW = 0.0426

Unknown

SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454