Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G57610 - ( protein kinase family protein )
15 Proteins interacs with AT5G57610Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G11130 | Predictedin vitro | FSW = 0.0902
| Unknown | CLATHRIN HEAVY CHAIN PUTATIVE |
AT5G10450 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.0418
| Unknown | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G33650 | Predictedin vivo | FSW = 0.0186
| Unknown | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
AT5G06290 | Predictedin vivotwo hybrid | FSW = 0.0199
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT5G45970 | Predictedin vitroPhenotypic Suppressionin vitro | FSW = 0.0909
| Unknown | ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING |
AT5G19330 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.0794
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN |
AT5G14300 | Predictedin vitro | FSW = 0.0593
| Unknown | ATPHB5 (PROHIBITIN 5) |
AT1G69220 | Predictedin vitroin vitroin vivo | FSW = 0.1058
| Unknown | SIK1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G08730 | Predictedin vivoin vitro | FSW = 0.0441
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G03840 | Predictedin vivo | FSW = 0.1455
| Unknown | TFL1 (TERMINAL FLOWER 1) PHOSPHATIDYLETHANOLAMINE BINDING |
AT4G11330 | PredictedPhenotypic SuppressionPhenotypic Suppressionin vivoin vitro | FSW = 0.0648
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
AT5G56580 | Predictedin vivoin vivoin vitroin vitroin vitroPhenotypic SuppressionPhenotypic SuppressionAffinity Capture-WesternbiochemicalAffinity Capture-MS | FSW = 0.2424
| Unknown | MKK6 (MAP KINASE KINASE 6) MAP KINASE KINASE/ KINASE |
AT2G26210 | Predictedin vivoin vitro | FSW = 0.1701
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT3G57550 | Predictedin vitro | FSW = 0.0711
| Unknown | AGK2 (GUANYLATE KINASE) GUANYLATE KINASE |
AT5G25060 | Predictedin vivoin vitro | FSW = 0.0593
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454