Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G57870 - ( eukaryotic translation initiation factor 4F putative / eIF-4F putative )
26 Proteins interacs with AT5G57870Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G22290 | Experimentalpull down | FSW = 0.0573
| Class B:unclearnucleuscytosolClass D:nucleus (p = 0.78) | ANAC089 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 89) TRANSCRIPTION FACTOR |
AT5G09590 | PredictedSynthetic Lethality | FSW = 0.0707
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT4G16520 | PredictedAffinity Capture-MS | FSW = 0.0400
| Unknown | ATG8F (AUTOPHAGY 8F) MICROTUBULE BINDING |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0170
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G48860 | Predictedtwo hybrid | FSW = 0.0298
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT2G33340 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-Westerntwo hybridco-fractionationCo-fractionationAffinity Capture-MS | FSW = 0.0567
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G64740 | Predictedin vivoin vitro | FSW = 0.0429
| Unknown | CESA6 (CELLULOSE SYNTHASE 6) CELLULOSE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G45780 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0104
| Unknown | PHOT1 (PHOTOTROPIN 1) FMN BINDING / BLUE LIGHT PHOTORECEPTOR/ KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT5G47510 | Predictedsynthetic growth defect | FSW = 0.0324
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT1G04750 | Predictedsynthetic growth defect | FSW = 0.0285
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT4G11420 | Predictedin vivoin vitro | FSW = 0.0411
| Unknown | EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR |
AT3G13920 | PredictedAffinity Capture-MS | FSW = 0.0502
| Unknown | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT2G15430 | PredictedSynthetic Lethality | FSW = 0.0118
| Unknown | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G13540 | Predictedin vivo | FSW = 0.1032
| Unknown | ABH1 (ABA HYPERSENSITIVE 1) RNA CAP BINDING |
AT1G29330 | PredictedSynthetic Lethality | FSW = 0.0545
| Unknown | ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR |
AT3G49100 | Predictedtwo hybrid | FSW = 0.0788
| Unknown | SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN PUTATIVE / SRP9 PUTATIVE |
AT4G34110 | Predictedin vivoin vitro | FSW = 0.0333
| Unknown | PAB2 (POLY(A) BINDING 2) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT1G34770 | PredictedAffinity Capture-MS | FSW = 0.0125
| Unknown | MAGE-8 ANTIGEN-RELATED |
AT2G15230 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.2286
| Unknown | ATLIP1 (ARABIDOPSIS THALIANA LIPASE 1) GALACTOLIPASE/ HYDROLASE/ PHOSPHOLIPASE/ TRIACYLGLYCEROL LIPASE |
AT2G46280 | PredictedReconstituted Complex | FSW = 0.0291
| Unknown | TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G47830 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MS | FSW = 0.2612
| Unknown | CATION EFFLUX FAMILY PROTEIN / METAL TOLERANCE PROTEIN PUTATIVE (MTPC1) |
AT1G13950 | PredictedSynthetic Lethality | FSW = 0.0097
| Unknown | ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) TRANSLATION INITIATION FACTOR |
AT3G09800 | PredictedSynthetic Lethality | FSW = 0.0469
| Unknown | PROTEIN BINDING |
AT3G25900 | PredictedSynthetic Lethality | FSW = 0.0552
| Unknown | HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE |
AT5G05070 | PredictedSynthetic Lethality | FSW = 0.1517
| Unknown | ZINC ION BINDING |
AT2G24050 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1202
| Unknown | MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454