Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G57890 - ( anthranilate synthase beta subunit putative )
63 Proteins interacs with AT5G57890Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G32470 | PredictedAffinity Capture-MS | FSW = 0.3016
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT2G33210 | Predictedpull down | FSW = 0.0013
| Unknown | HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING |
AT2G01250 | PredictedAffinity Capture-MS | FSW = 0.1789
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT4G38510 | PredictedAffinity Capture-MS | FSW = 0.0500
| Unknown | VACUOLAR ATP SYNTHASE SUBUNIT B PUTATIVE / V-ATPASE B SUBUNIT PUTATIVE / VACUOLAR PROTON PUMP B SUBUNIT PUTATIVE / V-ATPASE 57 KDA SUBUNIT PUTATIVE |
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.3920
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT2G29990 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3127
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT1G15210 | PredictedAffinity Capture-MS | FSW = 0.2817
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT5G24400 | PredictedAffinity Capture-MS | FSW = 0.2189
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT5G65430 | PredictedAffinity Capture-MS | FSW = 0.0895
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT2G39290 | PredictedAffinity Capture-MS | FSW = 0.0462
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT4G26970 | PredictedAffinity Capture-MS | FSW = 0.3139
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT1G51040 | PredictedAffinity Capture-MS | FSW = 0.1933
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT4G23430 | PredictedAffinity Capture-MS | FSW = 0.2295
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.1904
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.4090
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT2G21540 | PredictedAffinity Capture-MS | FSW = 0.3071
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT5G62300 | PredictedAffinity Capture-MS | FSW = 0.3125
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT5G43370 | PredictedAffinity Capture-MS | FSW = 0.2065
| Unknown | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G23900 | PredictedAffinity Capture-MS | FSW = 0.1699
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13D) |
AT1G04750 | PredictedSynthetic Lethality | FSW = 0.0175
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT1G13320 | PredictedAffinity Capture-MS | FSW = 0.1886
| Unknown | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT4G22120 | PredictedAffinity Capture-MS | FSW = 0.3023
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.2319
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT4G36860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3510
| Unknown | ZINC ION BINDING |
AT2G47640 | PredictedAffinity Capture-MS | FSW = 0.1317
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT3G20970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1241
| Unknown | NFU4 STRUCTURAL MOLECULE |
AT4G31470 | PredictedAffinity Capture-MS | FSW = 0.0557
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT5G57625 | PredictedAffinity Capture-MS | FSW = 0.3159
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G16050 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2979
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT5G53350 | Predictedpull down | FSW = 0.0135
| Unknown | CLPX ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G62880 | PredictedAffinity Capture-MS | FSW = 0.2284
| Unknown | CORNICHON FAMILY PROTEIN |
AT1G63660 | PredictedAffinity Capture-MS | FSW = 0.1878
| Unknown | GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE |
AT1G78970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1131
| Unknown | LUP1 (LUPEOL SYNTHASE 1) BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.3390
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G43360 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3711
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.3580
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G19940 | PredictedAffinity Capture-MS | FSW = 0.1911
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G59410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2979
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G62770 | PredictedAffinity Capture-MS | FSW = 0.1757
| Unknown | ATATG18A |
AT4G25860 | PredictedAffinity Capture-MS | FSW = 0.3342
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.2094
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.3227
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT1G11530 | PredictedAffinity Capture-MS | FSW = 0.2005
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
AT1G26320 | PredictedSynthetic Lethality | FSW = 0.0139
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G68390 | PredictedAffinity Capture-MS | FSW = 0.0115
| Unknown | UNKNOWN PROTEIN |
AT2G03410 | PredictedAffinity Capture-MS | FSW = 0.2230
| Unknown | MO25 FAMILY PROTEIN |
AT2G17620 | PredictedAffinity Capture-MS | FSW = 0.2323
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G32160 | PredictedAffinity Capture-MS | FSW = 0.0547
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321701) HAS 325 BLAST HITS TO 315 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 130 PLANTS - 30 VIRUSES - 0 OTHER EUKARYOTES - 70 (SOURCE NCBI BLINK) |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0956
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G41530 | PredictedAffinity Capture-MS | FSW = 0.3519
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT2G47570 | PredictedAffinity Capture-MS | FSW = 0.1659
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT3G11900 | PredictedAffinity Capture-MS | FSW = 0.3756
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G53510 | PredictedAffinity Capture-MS | FSW = 0.1568
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
AT3G63280 | PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | ATNEK4 (NIMA-RELATED KINASE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G19645 | PredictedAffinity Capture-MS | FSW = 0.1867
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT4G35620 | PredictedAffinity Capture-MS | FSW = 0.2739
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G02560 | PredictedAffinity Capture-MS | FSW = 0.0870
| Unknown | HTA12 DNA BINDING |
AT5G17000 | PredictedAffinity Capture-MS | FSW = 0.2178
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G19150 | PredictedAffinity Capture-MS | FSW = 0.3161
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G28470 | PredictedAffinity Capture-MS | FSW = 0.0500
| Unknown | TRANSPORTER |
AT5G46150 | PredictedAffinity Capture-MS | FSW = 0.0926
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G54200 | PredictedAffinity Capture-MS | FSW = 0.1574
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT5G60870 | PredictedAffinity Capture-MS | FSW = 0.0420
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454