Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G57950 - ( 26S proteasome regulatory subunit putative )

19 Proteins interacs with AT5G57950
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G05710

Predicted

Affinity Capture-MS

FSW = 0.0652

Unknown

ACONITATE HYDRATASE CYTOPLASMIC PUTATIVE / CITRATE HYDRO-LYASE/ACONITASE PUTATIVE
AT4G04910

Predicted

two hybrid

FSW = 0.0206

Unknown

NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0122

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT3G60820

Predicted

two hybrid

FSW = 0.0476

Unknown

PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G45000

Predicted

two hybrid

FSW = 0.1512

Unknown

26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE
AT4G35830

Predicted

Affinity Capture-MS

FSW = 0.0860

Unknown

ACONITATE HYDRATASE CYTOPLASMIC / CITRATE HYDRO-LYASE / ACONITASE (ACO)
AT4G24400

Predicted

Affinity Capture-MS

FSW = 0.0120

Unknown

CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE
AT2G20140

Predicted

two hybrid

two hybrid

FSW = 0.1481

Unknown

26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE
AT3G06110

Predicted

two hybrid

FSW = 0.1423

Unknown

MKP2 (MAPK PHOSPHATASE 2) MAP KINASE PHOSPHATASE/ PROTEIN TYROSINE/SERINE/THREONINE PHOSPHATASE
AT1G09100

Predicted

two hybrid

FSW = 0.1613

Unknown

RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING
AT3G05530

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.1344

Unknown

RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING
AT5G57015

Predicted

biochemical

FSW = 0.0269

Unknown

CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G18880

Predicted

Affinity Capture-MS

FSW = 0.0173

Unknown

AT-HSFA4A DNA BINDING / TRANSCRIPTION FACTOR
AT3G14290

Predicted

Affinity Capture-MS

FSW = 0.0593

Unknown

PAE2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G57870

Predicted

two hybrid

two hybrid

FSW = 0.0098

Unknown

SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE
AT4G29040

Predicted

two hybrid

FSW = 0.1423

Unknown

RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE
AT5G43010

Predicted

two hybrid

two hybrid

FSW = 0.1320

Unknown

RPT4A ATPASE
AT1G73570

Predicted

two hybrid

FSW = 0.0214

Unknown

SUPPRESSOR OF LIN-12-LIKE PROTEIN-RELATED / SEL-1 PROTEIN-RELATED
AT2G43190

Predicted

Affinity Capture-MS

FSW = 0.0121

Unknown

RIBONUCLEASE P FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454