Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G57980 - ( RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT C) DNA binding / DNA-directed RNA polymerase )

8 Proteins interacs with AT5G57980
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G03760

Predicted

Reconstituted Complex

FSW = 0.0863

Unknown

PREFOLDIN SUBUNIT FAMILY PROTEIN
AT3G52270Predicted

in vivo

in vitro

FSW = 0.0800

Unknown

ATP BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR
AT5G41910

Predicted

Affinity Capture-MS

FSW = 0.0923

Unknown

RNA POLYMERASE II MEDIATOR COMPLEX PROTEIN-RELATED
AT5G51940

Predicted

in vitro

FSW = 0.0744

Unknown

NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G54490

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.3401

Unknown

RPB5E (RNA POLYMERASE II FIFTH LARGEST SUBUNIT E) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G57080

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.2742

Unknown

NRPE5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G22320

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1750

Unknown

NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT2G41340

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.2101

Unknown

RPB5D (RNA POLYMERASE II FIFTH LARGEST SUBUNIT D) DNA BINDING / DNA-DIRECTED RNA POLYMERASE

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454