Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G58000 - ( LOCATED IN endoplasmic reticulum chloroplast CONTAINS InterPro DOMAIN/s Reticulon (InterProIPR003388) BEST Arabidopsis thaliana protein match is reticulon family protein (TAIRAT4G284301) Has 1047 Blast hits to 1034 proteins in 125 species Archae - 0 Bacteria - 2 Metazoa - 715 Fungi - 46 Plants - 58 Viruses - 4 Other Eukaryotes - 222 (source NCBI BLink) )

17 Proteins interacs with AT5G58000
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G12610

Experimental

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FSW = 0.0323

Class A:

nucleus

Class B:

plastid

TRANSCRIPTION INITIATION FACTOR IIF ALPHA SUBUNIT (TFIIF-ALPHA) FAMILY PROTEIN
AT5G66680

Predicted

interologs mapping

FSW = 0.0171

Class C:

nucleus

DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE
AT2G27490

Predicted

interologs mapping

FSW = 0.0727

Unknown

ATCOAE ATP BINDING / DEPHOSPHO-COA KINASE
AT1G02130

Predicted

Affinity Capture-Western

FSW = 0.0154

Unknown

ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING
AT3G56190

Predicted

two hybrid

FSW = 0.0071

Unknown

ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN
AT1G11910

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0659

Unknown

ASPARTYL PROTEASE FAMILY PROTEIN
AT5G58230

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0127

Unknown

MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING
AT1G04260

Predicted

Affinity Capture-Western

FSW = 0.0686

Unknown

MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7) PROTEIN BINDING
AT1G01310

Predicted

interologs mapping

FSW = 0.0471

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT1G63440

Predicted

interologs mapping

FSW = 0.0615

Unknown

HMA5 (HEAVY METAL ATPASE 5) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM
AT4G26840

Predicted

Affinity Capture-MS

FSW = 0.0170

Unknown

SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT3G19460

Predicted

two hybrid

FSW = 0.1333

Unknown

RETICULON FAMILY PROTEIN (RTNLB11)
AT4G12230

Predicted

two hybrid

FSW = 0.0889

Unknown

ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN
AT2G34770

Predicted

interologs mapping

FSW = 0.0323

Unknown

FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE
AT1G20575

Predicted

interologs mapping

FSW = 0.0786

Unknown

DOLICHYL-PHOSPHATE BETA-D-MANNOSYLTRANSFERASE PUTATIVE / DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE PUTATIVE / MANNOSE-P-DOLICHOL SYNTHASE PUTATIVE
AT5G05010

Predicted

interologs mapping

FSW = 0.0659

Unknown

CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT-RELATED
AT1G09460

Predicted

interologs mapping

FSW = 0.0701

Unknown

GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454