Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G58003 - ( CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) phosphoprotein phosphatase )
34 Proteins interacs with AT5G58003Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G12610 | ExperimentalReconstituted Complexpull down | FSW = 0.1977
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF ALPHA SUBUNIT (TFIIF-ALPHA) FAMILY PROTEIN |
AT1G73820 | Predictedinterologs mapping | FSW = 0.1145
| Unknown | SSU72-LIKE FAMILY PROTEIN |
AT4G35800 | PredictedAffinity Capture-WesternReconstituted ComplexCo-purificationReconstituted ComplexAffinity Capture-WesternProtein-peptideSynthetic LethalitybiochemicalAffinity Capture-MS | FSW = 0.2877
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G48750 | Predictedtwo hybrid | FSW = 0.0258
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G52640 | Predictedtwo hybrid | FSW = 0.0102
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G18040 | Predictedinterologs mappinginterologs mapping | FSW = 0.1594
| Unknown | PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT3G10330 | PredictedReconstituted Complex | FSW = 0.1366
| Unknown | TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2) |
AT3G50670 | Predictedin vivo | FSW = 0.0072
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G16980 | PredictedAffinity Capture-MS | FSW = 0.3344
| Unknown | NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT5G09920 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.3902
| Unknown | NRPB4 DNA-DIRECTED RNA POLYMERASE |
AT4G20440 | Predictedin vivo | FSW = 0.0111
| Unknown | SMB (SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B) |
AT5G44500 | Predictedin vivo | FSW = 0.0073
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT2G38560 | Predictedin vitroSynthetic Lethality | FSW = 0.1972
| Unknown | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT4G08350 | Predictedsynthetic growth defect | FSW = 0.3172
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT2G15430 | PredictedAffinity Capture-MSCo-purification | FSW = 0.2990
| Unknown | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G06210 | Predictedsynthetic growth defect | FSW = 0.1140
| Unknown | ELF8 (EARLY FLOWERING 8) BINDING |
AT1G75510 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.4026
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN |
AT5G59180 | PredictedAffinity Capture-MS | FSW = 0.4833
| Unknown | NRPB7 DNA-DIRECTED RNA POLYMERASE/ RNA BINDING |
AT3G52090 | PredictedAffinity Capture-MS | FSW = 0.4359
| Unknown | NRPB11 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT4G21710 | PredictedAffinity Capture-MS | FSW = 0.3931
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G61700 | PredictedAffinity Capture-MS | FSW = 0.3275
| Unknown | DNA-DIRECTED RNA POLYMERASE II PUTATIVE (RPB10) |
AT1G49540 | PredictedSynthetic Lethality | FSW = 0.1638
| Unknown | NUCLEOTIDE BINDING |
AT5G13680 | PredictedSynthetic Lethality | FSW = 0.2222
| Unknown | ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR |
AT5G50320 | PredictedSynthetic Lethality | FSW = 0.1268
| Unknown | ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE |
AT1G61040 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1633
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT1G79730 | PredictedSynthetic Lethality | FSW = 0.1818
| Unknown | ELF7 (EARLY FLOWERING 7) |
AT3G22590 | Predictedsynthetic growth defect | FSW = 0.1210
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT5G42190 | Predictedtwo hybrid | FSW = 0.0051
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G61150 | Predictedsynthetic growth defect | FSW = 0.0936
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
AT5G63670 | Predictedsynthetic growth defect | FSW = 0.3344
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT1G54250 | PredictedAffinity Capture-MS | FSW = 0.3396
| Unknown | NRPB8A DNA-DIRECTED RNA POLYMERASE |
AT3G22320 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.3261
| Unknown | NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G41010 | PredictedAffinity Capture-MS | FSW = 0.2664
| Unknown | NRPB12 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G51940 | PredictedAffinity Capture-MS | FSW = 0.3346
| Unknown | NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454