Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G58060 - ( YKT61 )

39 Proteins interacs with AT5G58060
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G26980

Experimental

Reconstituted Complex

coimmunoprecipitation

FSW = 0.1667

Class B:

unclear

golgi

endoplasmic reticulum

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

SYP41 (SYNTAXIN OF PLANTS 41) SNAP RECEPTOR
AT5G41790

Predicted

interologs mapping

FSW = 0.0549

Unknown

CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING
AT3G56190

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

interaction prediction

FSW = 0.2051

Unknown

ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN
AT5G39510

Predicted

interologs mapping

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

interologs mapping

Co-purification

FSW = 0.3991

Unknown

SGR4 (SHOOT GRAVITROPSIM 4) RECEPTOR
AT1G73430

Predicted

interologs mapping

Affinity Capture-Western

interaction prediction

FSW = 0.1905

Unknown

SEC34-LIKE FAMILY PROTEIN
AT2G45200

Predicted

Synthetic Lethality

Reconstituted Complex

Reconstituted Complex

Affinity Capture-Western

interaction prediction

FSW = 0.1402

Unknown

GOS12 (GOLGI SNARE 12) SNARE BINDING
AT5G46860

Predicted

Affinity Capture-MS

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.2407

Unknown

VAM3 SNAP RECEPTOR
AT2G25340

Predicted

Affinity Capture-Western

Affinity Capture-Western

interologs mapping

FSW = 0.2449

Unknown

ATVAMP712 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 712)
AT1G79590

Predicted

Affinity Capture-Western

Affinity Capture-Western

Co-purification

interaction prediction

FSW = 0.2238

Unknown

SYP52 (SYNTAXIN OF PLANTS 52) SNAP RECEPTOR
AT5G11150

Predicted

interaction prediction

FSW = 0.1252

Unknown

ATVAMP713 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 713)
AT4G04910

Predicted

Affinity Capture-Western

FSW = 0.1303

Unknown

NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G29100

Predicted

interaction prediction

interologs mapping

FSW = 0.3478

Unknown

VTI13 SNARE BINDING / RECEPTOR
AT1G64330

Predicted

interologs mapping

FSW = 0.1204

Unknown

MYOSIN HEAVY CHAIN-RELATED
AT3G12110

Predicted

Affinity Capture-Western

FSW = 0.0230

Unknown

ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G11890

Predicted

Synthetic Lethality

Reconstituted Complex

Reconstituted Complex

Synthetic Rescue

interologs mapping

FSW = 0.0764

Unknown

SEC22 TRANSPORTER
AT1G26670

Predicted

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

interologs mapping

Reconstituted Complex

FSW = 0.5079

Unknown

VTI1B SNARE BINDING / RECEPTOR/ SOLUBLE NSF ATTACHMENT PROTEIN
AT5G19330

Predicted

Reconstituted Complex

Reconstituted Complex

FSW = 0.0370

Unknown

ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN
AT4G16830

Predicted

Affinity Capture-MS

FSW = 0.0050

Unknown

NUCLEAR RNA-BINDING PROTEIN (RGGA)
AT4G25340

Predicted

Synthetic Lethality

FSW = 0.0025

Unknown

IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT2G22290

Predicted

interologs mapping

interologs mapping

FSW = 0.0859

Unknown

ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT1G28490

Predicted

interaction prediction

FSW = 0.3030

Unknown

SYP61 (SYNTAXIN OF PLANTS 61) SNAP RECEPTOR
AT3G24350

Predicted

interaction prediction

Reconstituted Complex

Reconstituted Complex

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

Co-purification

Synthetic Rescue

FSW = 0.2813

Unknown

SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR
AT3G05710

Predicted

Co-purification

FSW = 0.1066

Unknown

SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR
AT1G77140

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.1898

Unknown

VPS45 (VACUOLAR PROTEIN SORTING 45) PROTEIN TRANSPORTER
AT3G54860

Predicted

Co-purification

FSW = 0.1097

Unknown

VACUOLAR PROTEIN SORTING PROTEIN PUTATIVE
AT3G48470

Predicted

Phenotypic Enhancement

FSW = 0.0093

Unknown

EMB2423 (EMBRYO DEFECTIVE 2423)
AT3G12280

Predicted

Phenotypic Enhancement

FSW = 0.0013

Unknown

RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT1G08190

Predicted

Affinity Capture-Western

FSW = 0.1569

Unknown

VACUOLAR ASSEMBLY PROTEIN PUTATIVE (VPS41)
AT2G17980

Predicted

Reconstituted Complex

Affinity Capture-MS

interaction prediction

FSW = 0.3557

Unknown

ATSLY1 PROTEIN TRANSPORTER
AT1G78770

Predicted

Synthetic Lethality

FSW = 0.0046

Unknown

CELL DIVISION CYCLE FAMILY PROTEIN
AT3G12670

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0155

Unknown

EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC
AT5G10260

Predicted

interologs mapping

FSW = 0.0582

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G40280

Predicted

interologs mapping

FSW = 0.0544

Unknown

ERA1 (ENHANCED RESPONSE TO ABA 1) FARNESYLTRANSTRANSFERASE/ PROTEIN FARNESYLTRANSFERASE
AT1G32270

Predicted

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

FSW = 0.2711

Unknown

ATSYP24 SNAP RECEPTOR/ PROTEIN BINDING
AT5G20350

Predicted

Affinity Capture-MS

FSW = 0.0926

Unknown

TIP1 (TIP GROWTH DEFECTIVE 1) S-ACYLTRANSFERASE/ ACYL BINDING
AT1G30820

Predicted

Affinity Capture-MS

FSW = 0.0246

Unknown

CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE
AT1G16225

Predicted

Affinity Capture-Western

FSW = 0.1896

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN CONTAINS INTERPRO DOMAIN/S TARGET SNARE COILED-COIL REGION (INTERPROIPR000727) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SYNTAXIN-RELATED FAMILY PROTEIN (TAIRAT1G162301) HAS 85 BLAST HITS TO 85 PROTEINS IN 27 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 22 PLANTS - 56 VIRUSES - 0 OTHER EUKARYOTES - 7 (SOURCE NCBI BLINK)
AT5G13060

Predicted

Reconstituted Complex

Reconstituted Complex

FSW = 0.0455

Unknown

ABAP1 (ARMADILLO BTB ARABIDOPSIS PROTEIN 1) PROTEIN BINDING
AT5G58180

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.0693

Unknown

ATYKT62

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454