Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G58060 - ( YKT61 )
39 Proteins interacs with AT5G58060Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G26980 | ExperimentalReconstituted Complexcoimmunoprecipitation | FSW = 0.1667
| Class B:uncleargolgiendoplasmic reticulumClass D:plastid (p = 0.78)nucleus (p = 0.78) | SYP41 (SYNTAXIN OF PLANTS 41) SNAP RECEPTOR |
AT5G41790 | Predictedinterologs mapping | FSW = 0.0549
| Unknown | CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING |
AT3G56190 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerninteraction prediction | FSW = 0.2051
| Unknown | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
AT5G39510 | Predictedinterologs mappingAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSReconstituted Complexinterologs mappingCo-purification | FSW = 0.3991
| Unknown | SGR4 (SHOOT GRAVITROPSIM 4) RECEPTOR |
AT1G73430 | Predictedinterologs mappingAffinity Capture-Westerninteraction prediction | FSW = 0.1905
| Unknown | SEC34-LIKE FAMILY PROTEIN |
AT2G45200 | PredictedSynthetic LethalityReconstituted ComplexReconstituted ComplexAffinity Capture-Westerninteraction prediction | FSW = 0.1402
| Unknown | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT5G46860 | PredictedAffinity Capture-MSReconstituted ComplexAffinity Capture-MSAffinity Capture-Western | FSW = 0.2407
| Unknown | VAM3 SNAP RECEPTOR |
AT2G25340 | PredictedAffinity Capture-WesternAffinity Capture-Westerninterologs mapping | FSW = 0.2449
| Unknown | ATVAMP712 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 712) |
AT1G79590 | PredictedAffinity Capture-WesternAffinity Capture-WesternCo-purificationinteraction prediction | FSW = 0.2238
| Unknown | SYP52 (SYNTAXIN OF PLANTS 52) SNAP RECEPTOR |
AT5G11150 | Predictedinteraction prediction | FSW = 0.1252
| Unknown | ATVAMP713 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 713) |
AT4G04910 | PredictedAffinity Capture-Western | FSW = 0.1303
| Unknown | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G29100 | Predictedinteraction predictioninterologs mapping | FSW = 0.3478
| Unknown | VTI13 SNARE BINDING / RECEPTOR |
AT1G64330 | Predictedinterologs mapping | FSW = 0.1204
| Unknown | MYOSIN HEAVY CHAIN-RELATED |
AT3G12110 | PredictedAffinity Capture-Western | FSW = 0.0230
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G11890 | PredictedSynthetic LethalityReconstituted ComplexReconstituted ComplexSynthetic Rescueinterologs mapping | FSW = 0.0764
| Unknown | SEC22 TRANSPORTER |
AT1G26670 | PredictedReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSinterologs mappingReconstituted Complex | FSW = 0.5079
| Unknown | VTI1B SNARE BINDING / RECEPTOR/ SOLUBLE NSF ATTACHMENT PROTEIN |
AT5G19330 | PredictedReconstituted ComplexReconstituted Complex | FSW = 0.0370
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN |
AT4G16830 | PredictedAffinity Capture-MS | FSW = 0.0050
| Unknown | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT4G25340 | PredictedSynthetic Lethality | FSW = 0.0025
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT2G22290 | Predictedinterologs mappinginterologs mapping | FSW = 0.0859
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT1G28490 | Predictedinteraction prediction | FSW = 0.3030
| Unknown | SYP61 (SYNTAXIN OF PLANTS 61) SNAP RECEPTOR |
AT3G24350 | Predictedinteraction predictionReconstituted ComplexReconstituted ComplexReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternCo-purificationSynthetic Rescue | FSW = 0.2813
| Unknown | SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR |
AT3G05710 | PredictedCo-purification | FSW = 0.1066
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT1G77140 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1898
| Unknown | VPS45 (VACUOLAR PROTEIN SORTING 45) PROTEIN TRANSPORTER |
AT3G54860 | PredictedCo-purification | FSW = 0.1097
| Unknown | VACUOLAR PROTEIN SORTING PROTEIN PUTATIVE |
AT3G48470 | PredictedPhenotypic Enhancement | FSW = 0.0093
| Unknown | EMB2423 (EMBRYO DEFECTIVE 2423) |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0013
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT1G08190 | PredictedAffinity Capture-Western | FSW = 0.1569
| Unknown | VACUOLAR ASSEMBLY PROTEIN PUTATIVE (VPS41) |
AT2G17980 | PredictedReconstituted ComplexAffinity Capture-MSinteraction prediction | FSW = 0.3557
| Unknown | ATSLY1 PROTEIN TRANSPORTER |
AT1G78770 | PredictedSynthetic Lethality | FSW = 0.0046
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT3G12670 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0155
| Unknown | EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC |
AT5G10260 | Predictedinterologs mapping | FSW = 0.0582
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G40280 | Predictedinterologs mapping | FSW = 0.0544
| Unknown | ERA1 (ENHANCED RESPONSE TO ABA 1) FARNESYLTRANSTRANSFERASE/ PROTEIN FARNESYLTRANSFERASE |
AT1G32270 | PredictedAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.2711
| Unknown | ATSYP24 SNAP RECEPTOR/ PROTEIN BINDING |
AT5G20350 | PredictedAffinity Capture-MS | FSW = 0.0926
| Unknown | TIP1 (TIP GROWTH DEFECTIVE 1) S-ACYLTRANSFERASE/ ACYL BINDING |
AT1G30820 | PredictedAffinity Capture-MS | FSW = 0.0246
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
AT1G16225 | PredictedAffinity Capture-Western | FSW = 0.1896
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN CONTAINS INTERPRO DOMAIN/S TARGET SNARE COILED-COIL REGION (INTERPROIPR000727) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SYNTAXIN-RELATED FAMILY PROTEIN (TAIRAT1G162301) HAS 85 BLAST HITS TO 85 PROTEINS IN 27 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 22 PLANTS - 56 VIRUSES - 0 OTHER EUKARYOTES - 7 (SOURCE NCBI BLINK) |
AT5G13060 | PredictedReconstituted ComplexReconstituted Complex | FSW = 0.0455
| Unknown | ABAP1 (ARMADILLO BTB ARABIDOPSIS PROTEIN 1) PROTEIN BINDING |
AT5G58180 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0693
| Unknown | ATYKT62 |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454