Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G58230 - ( MSI1 (MULTICOPY SUPRESSOR OF IRA1) protein binding )

60 Proteins interacs with AT5G58230
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G02580

Experimental

co-fractionation

Co-fractionation

Affinity Capture-Western

coimmunoprecipitation

FSW = 0.0821

Class B:

plastid

nucleus

cytosol

Class D:

nucleus (p = 0.78)

MEA (MEDEA) SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR
AT5G64630

Experimental

coimmunoprecipitation

FSW = 0.0782

Class B:

plastid

nucleus

FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING
AT3G20740

Experimental

molecular sieving

pull down

Affinity Capture-Western

Reconstituted Complex

coimmunoprecipitation

FSW = 0.0672

Class B:

plastid

nucleus

FIE (FERTILIZATION-INDEPENDENT ENDOSPERM) NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR
AT5G20570

Experimental

FSW = 0.0097

Unknown

RBX1 (RING-BOX 1) PROTEIN BINDING
AT5G11530

Experimental

Reconstituted Complex

in vitro

FSW = 0.0635

Unknown

EMF1 (EMBRYONIC FLOWER 1) TRANSCRIPTION REGULATOR
AT3G12280

Experimental

Reconstituted Complex

in vitro

FSW = 0.0126

Unknown

RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT1G07660Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0607

Class C:

plastid

HISTONE H4
AT2G33040

Predicted

Affinity Capture-MS

FSW = 0.0082

Class C:

plastid

ATP SYNTHASE GAMMA CHAIN MITOCHONDRIAL (ATPC)
AT5G09650

Predicted

Affinity Capture-Western

FSW = 0.0370

Class C:

plastid

ATPPA6 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 6) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT3G02520

Predicted

Phenotypic Enhancement

FSW = 0.0593

Class C:

plastid

GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G59690Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.1484

Class C:

plastid

HISTONE H4
AT5G24850

Predicted

Affinity Capture-MS

FSW = 0.0508

Class C:

plastid

CRY3 (CRYPTOCHROME 3) DNA BINDING / DNA PHOTOLYASE/ FMN BINDING
AT1G64190

Predicted

Affinity Capture-MS

FSW = 0.0087

Class C:

plastid

6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN
AT1G13230

Predicted

Gene fusion method

FSW = 0.0335

Class C:

plastid

LEUCINE-RICH REPEAT FAMILY PROTEIN
AT4G26110

Predicted

Phenotypic Enhancement

FSW = 0.0482

Unknown

NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING
AT4G25740

Predicted

Affinity Capture-MS

FSW = 0.0318

Unknown

40S RIBOSOMAL PROTEIN S10 (RPS10A)
AT5G19310

Predicted

Affinity Capture-Western

Co-purification

FSW = 0.1096

Unknown

HOMEOTIC GENE REGULATOR PUTATIVE
AT3G13445

Predicted

Affinity Capture-Western

FSW = 0.0274

Unknown

TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT4G38130

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

Reconstituted Complex

in vivo

in vitro

Affinity Capture-Western

Affinity Capture-MS

Co-purification

FSW = 0.0774

Unknown

HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING
AT2G38560

Predicted

Phenotypic Enhancement

FSW = 0.0979

Unknown

TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT5G58000

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0127

Unknown

LOCATED IN ENDOPLASMIC RETICULUM CHLOROPLAST CONTAINS INTERPRO DOMAIN/S RETICULON (INTERPROIPR003388) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RETICULON FAMILY PROTEIN (TAIRAT4G284301) HAS 1047 BLAST HITS TO 1034 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 715 FUNGI - 46 PLANTS - 58 VIRUSES - 4 OTHER EUKARYOTES - 222 (SOURCE NCBI BLINK)
AT2G43810

Predicted

Phenotypic Enhancement

FSW = 0.0448

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT1G02680

Predicted

Phenotypic Enhancement

FSW = 0.0285

Unknown

TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR
AT3G17590

Predicted

Co-purification

FSW = 0.0822

Unknown

BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING
AT1G19120

Predicted

Phenotypic Enhancement

FSW = 0.0721

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G03870

Predicted

Phenotypic Enhancement

FSW = 0.0466

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT3G06010

Predicted

Co-purification

FSW = 0.0908

Unknown

ATCHR12 ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G04400

Predicted

Affinity Capture-MS

FSW = 0.0231

Unknown

CRY2 (CRYPTOCHROME 2) BLUE LIGHT PHOTORECEPTOR/ PROTEIN HOMODIMERIZATION
AT5G18620

Predicted

Co-purification

Affinity Capture-Western

Co-purification

FSW = 0.0759

Unknown

CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING
AT1G75510

Predicted

Phenotypic Enhancement

FSW = 0.0128

Unknown

TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN
AT5G41670

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0313

Unknown

6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN
AT1G48160

Predicted

Affinity Capture-MS

FSW = 0.0091

Unknown

SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN PUTATIVE / SRP19 PUTATIVE
AT4G35050

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.0544

Unknown

MSI3 (MULTICOPY SUPPRESSOR OF IRA1 3) PROTEIN BINDING
AT4G02020

Predicted

co-fractionation

Co-fractionation

Reconstituted Complex

Affinity Capture-Western

FSW = 0.0632

Unknown

SWN (SWINGER) TRANSCRIPTION FACTOR
AT3G07880

Predicted

Phenotypic Enhancement

FSW = 0.0085

Unknown

RHO GDP-DISSOCIATION INHIBITOR FAMILY PROTEIN
AT2G37560

Predicted

Synthetic Lethality

FSW = 0.0732

Unknown

ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING
AT5G52650

Predicted

Affinity Capture-MS

FSW = 0.0188

Unknown

40S RIBOSOMAL PROTEIN S10 (RPS10C)
AT2G16780

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0335

Unknown

MSI2 (MULTICOPY SUPPRESSOR OF IRA1 2)
AT5G56740

Predicted

interaction prediction

two hybrid

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.1802

Unknown

HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2) H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT5G22760

Predicted

Reconstituted Complex

co-fractionation

Co-fractionation

FSW = 0.0985

Unknown

PHD FINGER FAMILY PROTEIN
AT1G70060Predicted

in vivo

in vitro

Reconstituted Complex

Affinity Capture-Western

FSW = 0.0722

Unknown

SNL4 (SIN3-LIKE 4)
AT1G66740

Predicted

Affinity Capture-MS

Phenotypic Enhancement

FSW = 0.1184

Unknown

SGA2
AT1G29150

Predicted

Phenotypic Enhancement

FSW = 0.0360

Unknown

ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)
AT3G46320Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1208

Unknown

HISTONE H4
AT4G12620

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0347

Unknown

ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING
AT4G27640

Predicted

Reconstituted Complex

FSW = 0.0679

Unknown

IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN
AT5G10390Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1216

Unknown

HISTONE H3
AT1G04950

Predicted

Phenotypic Enhancement

FSW = 0.0617

Unknown

TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT1G29990

Predicted

Synthetic Lethality

Phenotypic Enhancement

interaction prediction

FSW = 0.0339

Unknown

PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G32130

Predicted

Phenotypic Enhancement

FSW = 0.1294

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK)
AT1G54140

Predicted

Phenotypic Enhancement

FSW = 0.0792

Unknown

TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G54390

Predicted

Synthetic Lethality

FSW = 0.0223

Unknown

PHD FINGER PROTEIN-RELATED
AT1G65560

Predicted

Affinity Capture-MS

FSW = 0.0579

Unknown

ALLYL ALCOHOL DEHYDROGENASE PUTATIVE
AT3G02820

Predicted

Phenotypic Enhancement

FSW = 0.0297

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT3G25100

Predicted

Synthetic Lethality

Co-expression

FSW = 0.0526

Unknown

CDC45 (CELL DIVISION CYCLE 45)
AT5G10400Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1357

Unknown

HISTONE H3
AT5G48640

Predicted

Phenotypic Enhancement

FSW = 0.0562

Unknown

CYCLIN FAMILY PROTEIN
AT5G49510

Predicted

Synthetic Lethality

interaction prediction

Co-expression

FSW = 0.0321

Unknown

PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT1G26320

Predicted

Affinity Capture-MS

FSW = 0.0146

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT1G09200Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1034

Unknown

HISTONE H3

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454