Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G58230 - ( MSI1 (MULTICOPY SUPRESSOR OF IRA1) protein binding )
60 Proteins interacs with AT5G58230Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G02580 | Experimentalco-fractionationCo-fractionationAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.0821
| Class B:plastidnucleuscytosolClass D:nucleus (p = 0.78) | MEA (MEDEA) SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR |
AT5G64630 | Experimentalcoimmunoprecipitation | FSW = 0.0782
| Class B:plastidnucleus | FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G20740 | Experimentalmolecular sievingpull downAffinity Capture-WesternReconstituted Complexcoimmunoprecipitation | FSW = 0.0672
| Class B:plastidnucleus | FIE (FERTILIZATION-INDEPENDENT ENDOSPERM) NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR |
AT5G20570 | Experimental | FSW = 0.0097
| Unknown | RBX1 (RING-BOX 1) PROTEIN BINDING |
AT5G11530 | ExperimentalReconstituted Complexin vitro | FSW = 0.0635
| Unknown | EMF1 (EMBRYONIC FLOWER 1) TRANSCRIPTION REGULATOR |
AT3G12280 | ExperimentalReconstituted Complexin vitro | FSW = 0.0126
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT1G07660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0607
| Class C:plastid | HISTONE H4 |
AT2G33040 | PredictedAffinity Capture-MS | FSW = 0.0082
| Class C:plastid | ATP SYNTHASE GAMMA CHAIN MITOCHONDRIAL (ATPC) |
AT5G09650 | PredictedAffinity Capture-Western | FSW = 0.0370
| Class C:plastid | ATPPA6 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 6) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G02520 | PredictedPhenotypic Enhancement | FSW = 0.0593
| Class C:plastid | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G59690 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1484
| Class C:plastid | HISTONE H4 |
AT5G24850 | PredictedAffinity Capture-MS | FSW = 0.0508
| Class C:plastid | CRY3 (CRYPTOCHROME 3) DNA BINDING / DNA PHOTOLYASE/ FMN BINDING |
AT1G64190 | PredictedAffinity Capture-MS | FSW = 0.0087
| Class C:plastid | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
AT1G13230 | PredictedGene fusion method | FSW = 0.0335
| Class C:plastid | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT4G26110 | PredictedPhenotypic Enhancement | FSW = 0.0482
| Unknown | NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING |
AT4G25740 | PredictedAffinity Capture-MS | FSW = 0.0318
| Unknown | 40S RIBOSOMAL PROTEIN S10 (RPS10A) |
AT5G19310 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.1096
| Unknown | HOMEOTIC GENE REGULATOR PUTATIVE |
AT3G13445 | PredictedAffinity Capture-Western | FSW = 0.0274
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT4G38130 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternReconstituted Complexin vivoin vitroAffinity Capture-WesternAffinity Capture-MSCo-purification | FSW = 0.0774
| Unknown | HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING |
AT2G38560 | PredictedPhenotypic Enhancement | FSW = 0.0979
| Unknown | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT5G58000 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0127
| Unknown | LOCATED IN ENDOPLASMIC RETICULUM CHLOROPLAST CONTAINS INTERPRO DOMAIN/S RETICULON (INTERPROIPR003388) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RETICULON FAMILY PROTEIN (TAIRAT4G284301) HAS 1047 BLAST HITS TO 1034 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 715 FUNGI - 46 PLANTS - 58 VIRUSES - 4 OTHER EUKARYOTES - 222 (SOURCE NCBI BLINK) |
AT2G43810 | PredictedPhenotypic Enhancement | FSW = 0.0448
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT1G02680 | PredictedPhenotypic Enhancement | FSW = 0.0285
| Unknown | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT3G17590 | PredictedCo-purification | FSW = 0.0822
| Unknown | BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING |
AT1G19120 | PredictedPhenotypic Enhancement | FSW = 0.0721
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT2G03870 | PredictedPhenotypic Enhancement | FSW = 0.0466
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT3G06010 | PredictedCo-purification | FSW = 0.0908
| Unknown | ATCHR12 ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G04400 | PredictedAffinity Capture-MS | FSW = 0.0231
| Unknown | CRY2 (CRYPTOCHROME 2) BLUE LIGHT PHOTORECEPTOR/ PROTEIN HOMODIMERIZATION |
AT5G18620 | PredictedCo-purificationAffinity Capture-WesternCo-purification | FSW = 0.0759
| Unknown | CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING |
AT1G75510 | PredictedPhenotypic Enhancement | FSW = 0.0128
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN |
AT5G41670 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0313
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
AT1G48160 | PredictedAffinity Capture-MS | FSW = 0.0091
| Unknown | SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN PUTATIVE / SRP19 PUTATIVE |
AT4G35050 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0544
| Unknown | MSI3 (MULTICOPY SUPPRESSOR OF IRA1 3) PROTEIN BINDING |
AT4G02020 | Predictedco-fractionationCo-fractionationReconstituted ComplexAffinity Capture-Western | FSW = 0.0632
| Unknown | SWN (SWINGER) TRANSCRIPTION FACTOR |
AT3G07880 | PredictedPhenotypic Enhancement | FSW = 0.0085
| Unknown | RHO GDP-DISSOCIATION INHIBITOR FAMILY PROTEIN |
AT2G37560 | PredictedSynthetic Lethality | FSW = 0.0732
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT5G52650 | PredictedAffinity Capture-MS | FSW = 0.0188
| Unknown | 40S RIBOSOMAL PROTEIN S10 (RPS10C) |
AT2G16780 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0335
| Unknown | MSI2 (MULTICOPY SUPPRESSOR OF IRA1 2) |
AT5G56740 | Predictedinteraction predictiontwo hybridCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1802
| Unknown | HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2) H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT5G22760 | PredictedReconstituted Complexco-fractionationCo-fractionation | FSW = 0.0985
| Unknown | PHD FINGER FAMILY PROTEIN |
AT1G70060 | Predictedin vivoin vitroReconstituted ComplexAffinity Capture-Western | FSW = 0.0722
| Unknown | SNL4 (SIN3-LIKE 4) |
AT1G66740 | PredictedAffinity Capture-MSPhenotypic Enhancement | FSW = 0.1184
| Unknown | SGA2 |
AT1G29150 | PredictedPhenotypic Enhancement | FSW = 0.0360
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT3G46320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1208
| Unknown | HISTONE H4 |
AT4G12620 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0347
| Unknown | ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING |
AT4G27640 | PredictedReconstituted Complex | FSW = 0.0679
| Unknown | IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN |
AT5G10390 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1216
| Unknown | HISTONE H3 |
AT1G04950 | PredictedPhenotypic Enhancement | FSW = 0.0617
| Unknown | TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT1G29990 | PredictedSynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.0339
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G32130 | PredictedPhenotypic Enhancement | FSW = 0.1294
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK) |
AT1G54140 | PredictedPhenotypic Enhancement | FSW = 0.0792
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT1G54390 | PredictedSynthetic Lethality | FSW = 0.0223
| Unknown | PHD FINGER PROTEIN-RELATED |
AT1G65560 | PredictedAffinity Capture-MS | FSW = 0.0579
| Unknown | ALLYL ALCOHOL DEHYDROGENASE PUTATIVE |
AT3G02820 | PredictedPhenotypic Enhancement | FSW = 0.0297
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT3G25100 | PredictedSynthetic LethalityCo-expression | FSW = 0.0526
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
AT5G10400 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1357
| Unknown | HISTONE H3 |
AT5G48640 | PredictedPhenotypic Enhancement | FSW = 0.0562
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G49510 | PredictedSynthetic Lethalityinteraction predictionCo-expression | FSW = 0.0321
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT1G26320 | PredictedAffinity Capture-MS | FSW = 0.0146
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G09200 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1034
| Unknown | HISTONE H3 |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454