Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G58290 - ( RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPase )
73 Proteins interacs with AT5G58290| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT2G25490
   | Experimentalbiochemical | FSW = 0.2503
| Class D:nucleus (p = 0.78)cytosol (p = 0.67) | EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT5G67500
| PredictedAffinity Capture-MS | FSW = 0.0230
| Unknown | VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) VOLTAGE-GATED ANION CHANNEL |
| AT3G51260
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2157
| Unknown | PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT3G22630
| PredictedAffinity Capture-MS | FSW = 0.2481
| Unknown | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT4G14800
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2634
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT2G26140
| PredictedSynthetic RescuePhenotypic Suppression | FSW = 0.0140
| Unknown | FTSH4 (FTSH PROTEASE 4) ATP-DEPENDENT PEPTIDASE/ ATPASE/ METALLOPEPTIDASE |
| AT5G03290
| PredictedAffinity Capture-MSinteraction predictionGene neighbors methodCo-expression | FSW = 0.0195
| Unknown | ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE |
| AT1G24807
| PredictedAffinity Capture-MS | FSW = 0.0260
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
| AT1G67120 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0205
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR BINDING |
| AT1G17745
| Predictedinteraction predictiontwo hybrid | FSW = 0.0040
| Unknown | PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) PHOSPHOGLYCERATE DEHYDROGENASE |
| AT1G45000
| Predictedtwo hybridAffinity Capture-MSco-fractionationCo-fractionationCo-purificationtwo hybridPhylogenetic profile methodCo-expression | FSW = 0.4456
| Unknown | 26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE |
| AT1G53750
| Predictedin vivoCo-purificationco-fractionationCo-fractionationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSin vivoAffinity Capture-MSCo-purificationco-fractionationCo-fractionationinteraction predictionPhylogenetic profile method | FSW = 0.4430
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
| AT1G62740
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0222
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
| AT5G19990
| Predictedtwo hybridtwo hybridtwo hybridco-fractionationCo-fractionationAffinity Capture-MSAffinity Capture-MStwo hybridco-fractionationCo-fractionationAffinity Capture-MSinteraction predictionGene neighbors methodPhylogenetic profile method | FSW = 0.3206
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
| AT1G75990
| PredictedAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3983
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3) |
| AT1G20200
| PredictedAffinity Capture-MSCo-purificationinteraction prediction | FSW = 0.3902
| Unknown | EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR |
| AT1G04810
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4730
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
| AT2G20580
| PredictedCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4028
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
| AT2G20140
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSco-fractionationCo-fractionationCo-purificationinteraction predictionPhylogenetic profile methodCo-expression | FSW = 0.4600
| Unknown | 26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE |
| AT5G42790
| PredictedAffinity Capture-MS | FSW = 0.2579
| Unknown | PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT4G24820
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5795
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7) |
| AT1G09100
| Predictedtwo hybridtwo hybridtwo hybridAffinity Capture-MSco-fractionationCo-fractionationCo-purificationtwo hybridPhylogenetic profile methodCo-expression | FSW = 0.4875
| Unknown | RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING |
| AT1G16970
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0250
| Unknown | KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING |
| AT3G05530
| Predictedinteraction predictionin vivoin vitrotwo hybridAffinity Capture-MStwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MStwo hybridCo-purificationco-fractionationCo-fractionationinteraction predictionPhylogenetic profile methodCo-expression | FSW = 0.5089
| Unknown | RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING |
| AT1G03190
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0522
| Unknown | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
| AT1G61870
| PredictedGene fusion method | FSW = 0.0129
| Unknown | PPR336 (PENTATRICOPEPTIDE REPEAT 336) |
| AT3G09810
| PredictedAffinity Capture-MS | FSW = 0.0200
| Unknown | ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE |
| AT2G31970
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0498
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
| AT5G03340
| PredictedEnriched domain pairGene neighbors methodCo-expression | FSW = 0.0353
| Unknown | CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE |
| AT5G66130
| PredictedAffinity Capture-MS | FSW = 0.0325
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
| AT1G16190
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2475
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
| AT5G38470
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1897
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
| AT5G20850
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionGene neighbors methodCo-expression | FSW = 0.0274
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
| AT4G38630
| Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2396
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
| AT1G29150
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3458
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
| AT1G53780
| PredictedAffinity Capture-MSin vivoAffinity Capture-MSPhylogenetic profile method | FSW = 0.2775
| Unknown | ATP BINDING / ATPASE/ HYDROLASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| AT2G32730
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3843
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
| AT4G19006
| Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5051
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
| AT4G28470
| PredictedAffinity Capture-MS | FSW = 0.0976
| Unknown | RPN1B (26S PROTEASOME REGULATORY SUBUNIT S2 1B) BINDING / ENZYME REGULATOR |
| AT4G29040
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationco-fractionationCo-fractionationPhylogenetic profile methodCo-expression | FSW = 0.5287
| Unknown | RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE |
| AT5G05780
| PredictedAffinity Capture-MS | FSW = 0.1952
| Unknown | RPN8A (RP NON-ATPASE SUBUNIT 8A) |
| AT5G20000
| Predictedtwo hybridAffinity Capture-MSGene neighbors methodPhylogenetic profile method | FSW = 0.1681
| Unknown | 26S PROTEASOME AAA-ATPASE SUBUNIT PUTATIVE |
| AT5G45620
| PredictedAffinity Capture-MS | FSW = 0.0977
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
| AT1G51710
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2977
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
| AT1G64520
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3937
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
| AT2G03430
| Predictedinteraction predictiontwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-crystal StructureAffinity Capture-MSCo-crystal Structure | FSW = 0.3885
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
| AT2G15790
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0432
| Unknown | SQN (SQUINT) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| AT2G18600
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0195
| Unknown | RUB1-CONJUGATING ENZYME PUTATIVE |
| AT3G11270
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5317
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
| AT3G27000
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0483
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
| AT5G09900
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4451
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
| AT5G22840
| Predictedtwo hybridinteraction prediction | FSW = 0.0265
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT5G23540
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.5789
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
| AT5G43010
| PredictedAffinity Capture-MStwo hybridAffinity Capture-MStwo hybridCo-purificationco-fractionationCo-fractionationinteraction predictionGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4634
| Unknown | RPT4A ATPASE |
| AT1G03150
| PredictedAffinity Capture-MS | FSW = 0.0223
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE (GNAT) FAMILY PROTEIN |
| AT1G10520
| PredictedAffinity Capture-MS | FSW = 0.2590
| Unknown | DNA POLYMERASE LAMBDA (POLL) |
| AT1G25220
| PredictedAffinity Capture-MS | FSW = 0.0246
| Unknown | ASB1 (ANTHRANILATE SYNTHASE BETA SUBUNIT 1) ANTHRANILATE SYNTHASE |
| AT1G63160
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0300
| Unknown | REPLICATION FACTOR C 40 KDA PUTATIVE |
| AT1G77470
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0500
| Unknown | REPLICATION FACTOR C 36 KDA PUTATIVE |
| AT1G79990
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0339
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
| AT2G17190
| PredictedAffinity Capture-Western | FSW = 0.1586
| Unknown | UBIQUITIN FAMILY PROTEIN |
| AT2G39770
| PredictedAffinity Capture-MS | FSW = 0.1063
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
| AT3G12670
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1063
| Unknown | EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC |
| AT3G13970
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1295
| Unknown | APG12B (AUTOPHAGY 12 B) |
| AT5G16870
| PredictedAffinity Capture-Western | FSW = 0.0720
| Unknown | AMINOACYL-TRNA HYDROLASE |
| AT5G19820
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0085
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
| AT5G26110
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0992
| Unknown | ATP BINDING / CATALYTIC/ PROTEIN KINASE |
| AT1G64750
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3423
| Unknown | ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) |
| AT1G12270
| PredictedAffinity Capture-MS | FSW = 0.0234
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
| AT1G54210
| PredictedAffinity Capture-MS | FSW = 0.1488
| Unknown | ATG12A (AUTOPHAGY 12 A) PROTEIN BINDING |
| AT1G52360
| PredictedAffinity Capture-MS | FSW = 0.0381
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
| AT1G30820
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1558
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
| AT2G17530
| Predictedtwo hybrid | FSW = 0.0246
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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