Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT5G58290 - ( RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPase )

73 Proteins interacs with AT5G58290
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G25490

Experimental

biochemical

FSW = 0.2503

Class D:

nucleus (p = 0.78)

cytosol (p = 0.67)

EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G67500

Predicted

Affinity Capture-MS

FSW = 0.0230

Unknown

VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) VOLTAGE-GATED ANION CHANNEL
AT3G51260

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2157

Unknown

PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G22630

Predicted

Affinity Capture-MS

FSW = 0.2481

Unknown

PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G14800

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2634

Unknown

PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G26140

Predicted

Synthetic Rescue

Phenotypic Suppression

FSW = 0.0140

Unknown

FTSH4 (FTSH PROTEASE 4) ATP-DEPENDENT PEPTIDASE/ ATPASE/ METALLOPEPTIDASE
AT5G03290

Predicted

Affinity Capture-MS

interaction prediction

Gene neighbors method

Co-expression

FSW = 0.0195

Unknown

ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE
AT1G24807

Predicted

Affinity Capture-MS

FSW = 0.0260

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G67120Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0205

Unknown

ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR BINDING
AT1G17745

Predicted

interaction prediction

two hybrid

FSW = 0.0040

Unknown

PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) PHOSPHOGLYCERATE DEHYDROGENASE
AT1G45000

Predicted

two hybrid

Affinity Capture-MS

co-fractionation

Co-fractionation

Co-purification

two hybrid

Phylogenetic profile method

Co-expression

FSW = 0.4456

Unknown

26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE
AT1G53750

Predicted

in vivo

Co-purification

co-fractionation

Co-fractionation

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

in vivo

Affinity Capture-MS

Co-purification

co-fractionation

Co-fractionation

interaction prediction

Phylogenetic profile method

FSW = 0.4430

Unknown

RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE
AT1G62740

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0222

Unknown

STRESS-INDUCIBLE PROTEIN PUTATIVE
AT5G19990

Predicted

two hybrid

two hybrid

two hybrid

co-fractionation

Co-fractionation

Affinity Capture-MS

Affinity Capture-MS

two hybrid

co-fractionation

Co-fractionation

Affinity Capture-MS

interaction prediction

Gene neighbors method

Phylogenetic profile method

FSW = 0.3206

Unknown

RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE
AT1G75990

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-purification

FSW = 0.3983

Unknown

26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3)
AT1G20200

Predicted

Affinity Capture-MS

Co-purification

interaction prediction

FSW = 0.3902

Unknown

EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR
AT1G04810

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4730

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT2G20580

Predicted

Co-purification

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.4028

Unknown

RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR
AT2G20140

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

co-fractionation

Co-fractionation

Co-purification

interaction prediction

Phylogenetic profile method

Co-expression

FSW = 0.4600

Unknown

26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE
AT5G42790

Predicted

Affinity Capture-MS

FSW = 0.2579

Unknown

PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G24820

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.5795

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7)
AT1G09100

Predicted

two hybrid

two hybrid

two hybrid

Affinity Capture-MS

co-fractionation

Co-fractionation

Co-purification

two hybrid

Phylogenetic profile method

Co-expression

FSW = 0.4875

Unknown

RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING
AT1G16970

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0250

Unknown

KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING
AT3G05530

Predicted

interaction prediction

in vivo

in vitro

two hybrid

Affinity Capture-MS

two hybrid

two hybrid

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Co-purification

co-fractionation

Co-fractionation

interaction prediction

Phylogenetic profile method

Co-expression

FSW = 0.5089

Unknown

RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING
AT1G03190

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0522

Unknown

UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT1G61870

Predicted

Gene fusion method

FSW = 0.0129

Unknown

PPR336 (PENTATRICOPEPTIDE REPEAT 336)
AT3G09810

Predicted

Affinity Capture-MS

FSW = 0.0200

Unknown

ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE
AT2G31970

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0498

Unknown

RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT5G03340

Predicted

Enriched domain pair

Gene neighbors method

Co-expression

FSW = 0.0353

Unknown

CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE
AT5G66130

Predicted

Affinity Capture-MS

FSW = 0.0325

Unknown

ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE)
AT1G16190

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2475

Unknown

DNA REPAIR PROTEIN RAD23 PUTATIVE
AT5G38470

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1897

Unknown

DNA REPAIR PROTEIN RAD23 PUTATIVE
AT5G20850

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Gene neighbors method

Co-expression

FSW = 0.0274

Unknown

ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT4G38630

Predicted

two hybrid

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2396

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT1G29150

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.3458

Unknown

ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)
AT1G53780

Predicted

Affinity Capture-MS

in vivo

Affinity Capture-MS

Phylogenetic profile method

FSW = 0.2775

Unknown

ATP BINDING / ATPASE/ HYDROLASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT2G32730

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3843

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT4G19006

Predicted

two hybrid

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.5051

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT4G28470

Predicted

Affinity Capture-MS

FSW = 0.0976

Unknown

RPN1B (26S PROTEASOME REGULATORY SUBUNIT S2 1B) BINDING / ENZYME REGULATOR
AT4G29040

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

co-fractionation

Co-fractionation

Phylogenetic profile method

Co-expression

FSW = 0.5287

Unknown

RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE
AT5G05780

Predicted

Affinity Capture-MS

FSW = 0.1952

Unknown

RPN8A (RP NON-ATPASE SUBUNIT 8A)
AT5G20000

Predicted

two hybrid

Affinity Capture-MS

Gene neighbors method

Phylogenetic profile method

FSW = 0.1681

Unknown

26S PROTEASOME AAA-ATPASE SUBUNIT PUTATIVE
AT5G45620

Predicted

Affinity Capture-MS

FSW = 0.0977

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT1G51710

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2977

Unknown

UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G64520

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.3937

Unknown

RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE
AT2G03430

Predicted

interaction prediction

two hybrid

two hybrid

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-crystal Structure

Affinity Capture-MS

Co-crystal Structure

FSW = 0.3885

Unknown

ANKYRIN REPEAT FAMILY PROTEIN
AT2G15790

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0432

Unknown

SQN (SQUINT) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT2G18600

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0195

Unknown

RUB1-CONJUGATING ENZYME PUTATIVE
AT3G11270

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.5317

Unknown

MEE34 (MATERNAL EFFECT EMBRYO ARREST 34)
AT3G27000

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0483

Unknown

ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G09900

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.4451

Unknown

EMB2107 (EMBRYO DEFECTIVE 2107)
AT5G22840

Predicted

two hybrid

interaction prediction

FSW = 0.0265

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT5G23540

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.5789

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT5G43010

Predicted

Affinity Capture-MS

two hybrid

Affinity Capture-MS

two hybrid

Co-purification

co-fractionation

Co-fractionation

interaction prediction

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.4634

Unknown

RPT4A ATPASE
AT1G03150

Predicted

Affinity Capture-MS

FSW = 0.0223

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE (GNAT) FAMILY PROTEIN
AT1G10520

Predicted

Affinity Capture-MS

FSW = 0.2590

Unknown

DNA POLYMERASE LAMBDA (POLL)
AT1G25220

Predicted

Affinity Capture-MS

FSW = 0.0246

Unknown

ASB1 (ANTHRANILATE SYNTHASE BETA SUBUNIT 1) ANTHRANILATE SYNTHASE
AT1G63160

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0300

Unknown

REPLICATION FACTOR C 40 KDA PUTATIVE
AT1G77470

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0500

Unknown

REPLICATION FACTOR C 36 KDA PUTATIVE
AT1G79990

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0339

Unknown

LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK)
AT2G17190

Predicted

Affinity Capture-Western

FSW = 0.1586

Unknown

UBIQUITIN FAMILY PROTEIN
AT2G39770

Predicted

Affinity Capture-MS

FSW = 0.1063

Unknown

CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE
AT3G12670

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1063

Unknown

EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC
AT3G13970

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.1295

Unknown

APG12B (AUTOPHAGY 12 B)
AT5G16870

Predicted

Affinity Capture-Western

FSW = 0.0720

Unknown

AMINOACYL-TRNA HYDROLASE
AT5G19820

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0085

Unknown

EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT5G26110

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0992

Unknown

ATP BINDING / CATALYTIC/ PROTEIN KINASE
AT1G64750

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3423

Unknown

ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))
AT1G12270

Predicted

Affinity Capture-MS

FSW = 0.0234

Unknown

STRESS-INDUCIBLE PROTEIN PUTATIVE
AT1G54210

Predicted

Affinity Capture-MS

FSW = 0.1488

Unknown

ATG12A (AUTOPHAGY 12 A) PROTEIN BINDING
AT1G52360

Predicted

Affinity Capture-MS

FSW = 0.0381

Unknown

COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE
AT1G30820

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1558

Unknown

CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE
AT2G17530

Predicted

two hybrid

FSW = 0.0246

Unknown

PROTEIN KINASE FAMILY PROTEIN

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454